LOCUS AK137625 2461 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male bone cDNA, RIKEN full-length enriched library, clone:9830169M16 product:peptidyl arginine deiminase, type IV, full insert sequence. ACCESSION AK137625 VERSION AK137625.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2461) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=9830169M16 FEATURES Location/Qualifiers source 1..2461 /clone="9830169M16" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:9830169M16" /db_xref="MGI:3541041" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="bone" misc_feature 1..2461 /note="peptidyl arginine deiminase, type IV (MGD|MGI:1338898 GB|NM_011061, evidence: BLASTN, 98%, match=2267)" /note="putative" BASE COUNT 565 a 711 c 684 g 501 t ORIGIN 1 ggcctgctga ccgagcgagc aaggatggcc caaggcgcgg tgatccacgt ggcccccgag 61 cagcccactc acgccgtgtg tgtggtgggc acagcgaccc cgctggatgt ccgcggttct 121 gctcctaagg gctacacaac cttcggcatc acagcctctc caggagtcat cgtagatgtc 181 atccatggtc ctccagtcaa gaagagtacc atgggggcct ccaaatggcc tctggaccct 241 gagctggagg tgaccctaca ggtgaaagca gccagcagca gaacagatga tgaaaaggtt 301 cgagtttcat actatggacc caagacctcc ccagtccaag ccctgatcta catcactggg 361 gtggaactgt ccctgagcgc agatgtcacc cgcacaggca gagtgaagcc agcccaagcc 421 gggaaggatc agagcacctg gacctggggc ccgggcggcc gtggcgccat cctgttggtg 481 aactgtgaca aagaggaccc tcaggcctcc ggaatggact ttgaggatga caagatcttg 541 gacaacaaag acctgcagga catgtctcca atgaccctaa gcacgaagac gcccaaagac 601 ttctttgaaa agtatcagct ggtgttggag gtgcccaagg ccaagatgaa cagagtgaga 661 gtcttccggg ccacacgggg caaactgccg tcccggtaca aggtggccct gggaccacaa 721 cagttctcgt attgcctgga gctgcccggc ggccagcaca gcacagactt ctatgtggaa 781 ggccttgctt tcccagacgc agacttcaaa gggctcattc ccctcaccat ctccctgctg 841 gacaagtcta acccggaggc tccccgaggc cctggtgttc caagacagtg tgacgttccg 901 tgtggccccc tggatcatga cccccaacac tcagcccccc caggaggtgt acgtgtgcag 961 ggtttctgac aatgaagact tcctaaagtc actagctact ctgaccaaga aagccaagtg 1021 caagctgact gtgtgccccg aggaggagaa tatagatgac caatggatgc aggacgaaat 1081 ggagattggc tacatccagg ccccacacaa gacgctgcct gtggtctttg actccccgag 1141 ggacagaggc ctgaaggatt tccctgtcaa gcgagttatg ggtccaaatt ttggctatgt 1201 gacccgaaag ctctatatgt cagagctcac tgggctggat gcctttggga acctggaggt 1261 gagtccccca gtcactgtca gagggaagga gtacccagct gggcagaatt ctcatcggga 1321 atagcggtta ctccagcagc gagagccggg acatgcacca ggccctgcag gacttcctga 1381 gcgcccagca ggtgcaggcc cccgtgaggc tcttctccga ttggctcttt gtgggtcacg 1441 tggatgagtt cttgagcttt gtcccagcgc gggacaagca gggttttcgg ctgctgctgt 1501 ccagccccag agcttgctat cagctgttcc aggagctaca gagccagggc cacggggagg 1561 cgacactgtt cgaaggactc aagaggaaaa ggcagacaat caatgaaatt ctgtccaaca 1621 agaaattaag agaccagaat gcctatgtgg agagctgtat cgactggaac cgggcggtgc 1681 tgaagcggga gctgggcctg gcagagggtg acatcatcga cattccgcag ctcttcaagc 1741 tcgcggggaa ctccagaggg aactctaagg cccaggcctt cttcccaaac atggtgaaca 1801 tgctggtcct gggcaagtac ctgggcatcc ccaagccctt tgggcccatc atcgatggcc 1861 actgctgcct ggaggaggag gtgcgttccc acctggagcc gctgggtctg cactgcacct 1921 tcatcaacga cttgtacacc taccacgtgt acaacgggga ggttcactgt ggcaccaatg 1981 tgcgcaggaa gcccttcacc ttcaagtggt ggcacatggt gccctgagtc actaccccag 2041 gccagcctcc ctcgaggact gtcctgggcc agaggtggct gctccccacc cccaccccca 2101 ccccgcagcg aggtgcagca agagatctgg ggatggttgg gcttccacag aggtggccac 2161 tgtccctgct gtgacatgtt tgcttcaccc acatctggct cctgtcccat ctctgtgtgt 2221 cctcaaatgg tccttgcata gcaagctcag ctctgcttag agatgctgca ataaagatgt 2281 agttttgtat ctttagttta ccacggagtt ccacaccccc agccccaccc tccgcaaagc 2341 acattggaat caatttcaaa gcaccaatga ggtgaaaaag cttcaactat ggctggcagc 2401 tcttttgact tatttactct gccgtatgtg tctctctctt tatatatatt taataaaaat 2461 t //