LOCUS       AK137625                2461 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus adult male bone cDNA, RIKEN full-length enriched
            library, clone:9830169M16 product:peptidyl arginine deiminase,
            type IV, full insert sequence.
ACCESSION   AK137625
VERSION     AK137625.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2461)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
            Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
            Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=9830169M16
FEATURES             Location/Qualifiers
     source          1..2461
                     /clone="9830169M16"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:9830169M16"
                     /db_xref="MGI:3541041"
                     /db_xref="taxon:10090"
                     /dev_stage="adult"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /sex="male"
                     /strain="C57BL/6J"
                     /tissue_type="bone"
     misc_feature    1..2461
                     /note="peptidyl arginine deiminase, type IV
                     (MGD|MGI:1338898 GB|NM_011061, evidence: BLASTN, 98%,
                     match=2267)"
                     /note="putative"
BASE COUNT          565 a          711 c          684 g          501 t
ORIGIN      
        1 ggcctgctga ccgagcgagc aaggatggcc caaggcgcgg tgatccacgt ggcccccgag
       61 cagcccactc acgccgtgtg tgtggtgggc acagcgaccc cgctggatgt ccgcggttct
      121 gctcctaagg gctacacaac cttcggcatc acagcctctc caggagtcat cgtagatgtc
      181 atccatggtc ctccagtcaa gaagagtacc atgggggcct ccaaatggcc tctggaccct
      241 gagctggagg tgaccctaca ggtgaaagca gccagcagca gaacagatga tgaaaaggtt
      301 cgagtttcat actatggacc caagacctcc ccagtccaag ccctgatcta catcactggg
      361 gtggaactgt ccctgagcgc agatgtcacc cgcacaggca gagtgaagcc agcccaagcc
      421 gggaaggatc agagcacctg gacctggggc ccgggcggcc gtggcgccat cctgttggtg
      481 aactgtgaca aagaggaccc tcaggcctcc ggaatggact ttgaggatga caagatcttg
      541 gacaacaaag acctgcagga catgtctcca atgaccctaa gcacgaagac gcccaaagac
      601 ttctttgaaa agtatcagct ggtgttggag gtgcccaagg ccaagatgaa cagagtgaga
      661 gtcttccggg ccacacgggg caaactgccg tcccggtaca aggtggccct gggaccacaa
      721 cagttctcgt attgcctgga gctgcccggc ggccagcaca gcacagactt ctatgtggaa
      781 ggccttgctt tcccagacgc agacttcaaa gggctcattc ccctcaccat ctccctgctg
      841 gacaagtcta acccggaggc tccccgaggc cctggtgttc caagacagtg tgacgttccg
      901 tgtggccccc tggatcatga cccccaacac tcagcccccc caggaggtgt acgtgtgcag
      961 ggtttctgac aatgaagact tcctaaagtc actagctact ctgaccaaga aagccaagtg
     1021 caagctgact gtgtgccccg aggaggagaa tatagatgac caatggatgc aggacgaaat
     1081 ggagattggc tacatccagg ccccacacaa gacgctgcct gtggtctttg actccccgag
     1141 ggacagaggc ctgaaggatt tccctgtcaa gcgagttatg ggtccaaatt ttggctatgt
     1201 gacccgaaag ctctatatgt cagagctcac tgggctggat gcctttggga acctggaggt
     1261 gagtccccca gtcactgtca gagggaagga gtacccagct gggcagaatt ctcatcggga
     1321 atagcggtta ctccagcagc gagagccggg acatgcacca ggccctgcag gacttcctga
     1381 gcgcccagca ggtgcaggcc cccgtgaggc tcttctccga ttggctcttt gtgggtcacg
     1441 tggatgagtt cttgagcttt gtcccagcgc gggacaagca gggttttcgg ctgctgctgt
     1501 ccagccccag agcttgctat cagctgttcc aggagctaca gagccagggc cacggggagg
     1561 cgacactgtt cgaaggactc aagaggaaaa ggcagacaat caatgaaatt ctgtccaaca
     1621 agaaattaag agaccagaat gcctatgtgg agagctgtat cgactggaac cgggcggtgc
     1681 tgaagcggga gctgggcctg gcagagggtg acatcatcga cattccgcag ctcttcaagc
     1741 tcgcggggaa ctccagaggg aactctaagg cccaggcctt cttcccaaac atggtgaaca
     1801 tgctggtcct gggcaagtac ctgggcatcc ccaagccctt tgggcccatc atcgatggcc
     1861 actgctgcct ggaggaggag gtgcgttccc acctggagcc gctgggtctg cactgcacct
     1921 tcatcaacga cttgtacacc taccacgtgt acaacgggga ggttcactgt ggcaccaatg
     1981 tgcgcaggaa gcccttcacc ttcaagtggt ggcacatggt gccctgagtc actaccccag
     2041 gccagcctcc ctcgaggact gtcctgggcc agaggtggct gctccccacc cccaccccca
     2101 ccccgcagcg aggtgcagca agagatctgg ggatggttgg gcttccacag aggtggccac
     2161 tgtccctgct gtgacatgtt tgcttcaccc acatctggct cctgtcccat ctctgtgtgt
     2221 cctcaaatgg tccttgcata gcaagctcag ctctgcttag agatgctgca ataaagatgt
     2281 agttttgtat ctttagttta ccacggagtt ccacaccccc agccccaccc tccgcaaagc
     2341 acattggaat caatttcaaa gcaccaatga ggtgaaaaag cttcaactat ggctggcagc
     2401 tcttttgact tatttactct gccgtatgtg tctctctctt tatatatatt taataaaaat
     2461 t
//