LOCUS AK136237 2132 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
enriched library, clone:7420488E15 product:weakly similar to CDC42
binding protein kinase alpha (DMPK-like) [Homo sapiens], full
insert sequence.
ACCESSION AK136237
VERSION AK136237.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2132)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=7420488E15
FEATURES Location/Qualifiers
source 1..2132
/clone="7420488E15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:7420488E15"
/db_xref="MGI:3539151"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="in vitro fertilized eggs"
misc_feature 1..2132
/note="putative"
/note="weakly similar to CDC42 binding protein kinase
alpha (DMPK-like) [Homo sapiens] (UniProt|Q86XX2,
evidence: FASTY, 51.8%ID, 8.5%length, match=557)"
BASE COUNT 626 a 371 c 431 g 704 t
ORIGIN
1 gaggaggatc agcagtctca attaatctgg attcccgaga tctttcaaca ctggaccacc
61 aaacagacat catacaccag ctgatatgag gcccccaaca cacatacagt agaggacttc
121 cagtgagtct ctgtaattcc tctacacatc gtgattggat tgcccagtgg ttttataact
181 ctcagctgcg ttcttgttgg ttttcttcct attgtcaaga gtcgtttatt atggcaagct
241 aaaccattta cttctaaagt gaagcaaatg cgattacata gagaagactt tgaaatatta
301 aaggtgattg gtcgaggagc ttttggggag gaaaaccttt aacttacgcc ctgggtgtta
361 cctgtccaca gcttcctggt ggctcaccgc ttctgcctgc tccagccttg ctccggcagc
421 ttccaggctt ctgggcttca gagcttgttg tgaaagcttg ctgctttggc ctgctacccc
481 tgcttcaggt tgctgtagtt aaactaaaaa atgcagataa agtattcgcc atgaaaattc
541 tgaacaagtg ggaaatgctg aaaagagctg agacagcgtg ctttcgtgaa gagagggatg
601 tgttggtaaa tggagacagt aagtggataa ccactctgca ctatgctttc caggatgaca
661 ataacttagt aagtagtcgt atgtttttat atttgtagcc tcttgttggc caactttagc
721 attatacttg aaggtatttc ttaaatgtag atgttattta aaatagaaaa atcactgcac
781 ttcacagagc atcagtaata cacttggtat tggtacttag cacacttgag catgtaaccc
841 cttggtatga gaattttttg tctgagaaat ttgatgctgt tttattgaat ctgcttatac
901 ctttaaataa gaaatcccaa acgaaatcca gtctgtttta attttcttcc attaaattct
961 ataggaatga gtttgagagt ttttctcttt atgactctcc caatgtattt tattagtagt
1021 gttctgattt ttaaaagttt acacactttt caaagtgacc gtgtgctgta tgagcccata
1081 tatattgaca tcgtggacca cttcataaaa gcttgggggg aaaaaagctt agagaaaatt
1141 cagaatatta gaatctgtac cacttgaata gagacaccag aaatgaggaa gtaaaagtca
1201 aaggagaaac aagttgagtt tgttccagtt gagcatgtaa ctcctttgcc tgctattcaa
1261 agtttttctg tttttgatcc acttttatct ctaggtttat atcttttagg agtatattaa
1321 tgtcttagat gctgctatgt accagacttg acaactagat tagaacgcag agggggcggt
1381 tctggagtcc tgggagatgt gtgtacgctt ctgctcactt tagatggggg accagatggc
1441 acactacagc actaatacca tcaaagcccc aacttggtga gccagtgagt tttatttggg
1501 ttaattgcag gagcagaaat tactcaaagg cagctctgtt accatcatgc atcatatgta
1561 gtgtgtgctt tgtagtcaga attgttttat aaatgacagg gtaaagcttt gcatgtattt
1621 attgttcagt gtcagagtga atgaaatgat gttctacgtg gaaagtaata aaggctaaaa
1681 ttctgtccgt atattctttt ggagatagat ttatcactga atttatgcat tgcttaaaat
1741 ctacattttg ttttaaatat atatgtaaat tttaaaaagt gattttaaat catgagtctc
1801 caatgagtgc tggtaataaa acttgagtcc tctgtaagaa catcaactgc tcttattgtt
1861 gggccatctc tccagcctcc caaatgtcaa atttcaaaga ccgaaaattt gccaaaaagt
1921 ataaagatga agaaagaagt ctgagctgct attgtgtctt ctgagttact tagtctgatt
1981 tgcgttcttt gcataagatt ttaggattta caattcttct tcaatgattt ttctctaaaa
2041 gcagtaatct gtatattttc agttatatta attatattgg aatagaagta acagaatttc
2101 aaagaggatc aaaataaaaa ttcttgtcat tt
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