LOCUS AK134686 2908 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
enriched library, clone:6330524D21 product:unclassifiable, full
insert sequence.
ACCESSION AK134686
VERSION AK134686.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2908)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6330524D21
FEATURES Location/Qualifiers
source 1..2908
/clone="6330524D21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6330524D21"
/db_xref="MGI:3536498"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="medulla oblongata"
misc_feature 1..2908
/note="putative"
/note="unclassifiable"
BASE COUNT 757 a 604 c 583 g 964 t
ORIGIN
1 attaatgagg cccaactgaa ggaaatggtg tttcccatct gaccagcttt gtggaaaaac
61 tccctaccta ctttttaaga gagagagaga aacctgataa agccttattt aaataaaatt
121 ttatttcgaa ctatcttgat catgcataaa agttataaaa aaaactttcc ttgaggattg
181 atcaccctac atcctgtcac ctcagataca tattcatatc agttttctgt aaaccaggat
241 atttttctac ataaccaacc atcaaaaaca ctgacacatt gctactattt aactctctag
301 ctctagtcag tctttctcgg tttttctctt gtcatttatg gtaaaggact ctggtctaag
361 ttagctattc cagttgttaa ctcttcttaa gagtttccac aagtttttgt tgttgggttt
421 tgggttttgt ttggggatag taagtacccc tgactggcct gcaacctact gtatagagta
481 ggctggcctc agactcccag tgttctgtgt gcctctgctt cctgggtgct gagattaaag
541 gtgtatgccc ccatagccag cattttttaa cttcttgggt caatgattgg attgccttag
601 ttttatctct ttaaagatat agtcgtaaag ctgttctctg catcctctca ggtggtaatg
661 ccttgttact taagactcac tgcagacact taattcaagt gacttcttac actacagagt
721 tactcctttt cctttttaac tcacacctgt gtgggggaag ataatctcac ctctcgtaca
781 cgtgttgcgc cctcaccaga ttcaggatag ttttcattat catggttgta tgttcagatg
841 tgtctttggt aaatttctaa actgatgttt tatgagagtt tatgttgtgt cagaattatt
901 tcatctgatt ttgtttatac aataacagca atactgttat tgtataaaca ggtctggtta
961 tttccttttc ttcctaagtt tttattctat ctccttctgc aaagtctttg aggttcctat
1021 tatgaatttg agaatggggt tggagactct tcttgaggtc ctgagttcaa ttcccagcaa
1081 ctacatggtg gctcacaacc atctgtaatg ggatccgata ccctcttctg gtgtgtccga
1141 agatggctac tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtataat cttttaaaaa
1201 ataaagaatt taagaacgaa ggagctggag aaataaatgg cttagtaatt aagagtacac
1261 actgctcttt cagaggacca cgtttgattc ccagcaccca cataggtagc tcaaaactgc
1321 cgatgctcct agctacaggg gatcctgcac ttctggcttc tataggcacc tgtgctcata
1381 tgcatgtagc ccctcccacc cccacacact ttttttaaaa attaaacata tttttataaa
1441 acaaatggaa tatattcaaa aggtattttt agaagaaatg ttgtaatcta ttttccaccc
1501 agtaactgtc tttctgttca acttgtacca cagcagacac agcttgtatt ttatgtccag
1561 gccaccagaa ataaacgcac ttagacccag cattcagttg tcaagaagag ctgatatggc
1621 agatagtgtt ttcatttggc atattacaag tacagcagca gcaggctcaa ctgctcagat
1681 tcactattta agactttctg acatttactt ctaattctcc agtcacgctc atcatctacc
1741 tctactgatc cggtttggtt tttctctcct ctgttggtct ctttctggga accagtatgt
1801 tctcctttat gtcctccatt gaacagaatt ataattctgc ttagtaccta caaacctctg
1861 ccaagccctc ccaaaaaagg gaggtcatgc tgactttgta actgtaatcc cgatttcatt
1921 cagttgtatt cttccaactc tgtgtggtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgaga
1981 gagagagaga gagagagaga gagagagaga gagagagaga gagagagaca cgctgggtca
2041 gagtacaact tgtaggaggt agttcctttt ttctaccaca tgatccccag gatcaaaatc
2101 aggttgtgag gcttagttag caagtgcctg tacctgctca atcatctcac cagcctatta
2161 tcaattccat ttgtatattc aatactctgt aggctgcgtg acactctgtt cttatgtggt
2221 gttctcaact cagtagaatc tttagacatt cacattttat agaaatatag attgcgagtt
2281 tgctaatact aacaagagga gcagaggctg ggaagctcct agattagcac ttggaagtgc
2341 tgttggcatc ttggttggga atgtttctta accaaggttt tcatgactgg ctcacctgtg
2401 cccttcacaa gaacccttga gatcttactc ttccaattta aggatgagaa atttacctaa
2461 ggtttggagg gatgactcaa gggttgagtt cagttcccag caaccacatg gtggctccca
2521 accttctgca atgggatctg ttgccctctt ctggtgtgtc tgaagacagc aacactctac
2581 tcatatacat caatgaaatc tttaaaagaa agaaatgtac ctatgtggga gtgcccagaa
2641 gtagtaccca gatgtgggaa agtggcacgt tggactcaat ttcagtttgc tttgctgtcc
2701 tgccaatgat cttactctat tttgtcaggg tgctctttca gccagcccca accccttacc
2761 actgagtggc ggcacattca ggattttctg tgactaatgt ccttatggct tttgccttta
2821 taaatgctga atccatgaat tttgggacaa gagttctttg tgacaagagc cttctctcta
2881 tcttaaataa agaatgctta tttggcct
//