LOCUS AK134633 3176 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
enriched library, clone:6330505E14 product:brain expressed,
associated with Nedd4, full insert sequence.
ACCESSION AK134633
VERSION AK134633.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3176)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6330505E14
FEATURES Location/Qualifiers
source 1..3176
/clone="6330505E14"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6330505E14"
/db_xref="MGI:3536435"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="medulla oblongata"
misc_feature 1..3176
/note="brain expressed, associated with Nedd4
(MGD|MGI:1929597 GB|AF240460, evidence: BLASTN, 99%,
match=2573)"
/note="putative"
BASE COUNT 725 a 970 c 863 g 618 t
ORIGIN
1 ggcccgacgc tgtgtgggtg tcgggctggc tgtgcgcaga ggggcgcggc tcgccgctcc
61 cacctcctcc gcgtccccat ctcagcaatg acccgggccg tggcgccacc gagctgagac
121 cggggagccg cgccgccgcc gaggagggcc caagagggtg acggtggaac gagcggcggc
181 gcggggaccg cgacggaggg acgggcgggg ctgctgttcc tgctgcaggg cagggcaggg
241 cagggcaggg ccccggagac cgccggcggc tgtttgcccg cggatcgagg gcgcgggtcc
301 gttctgcccg gccccgccgg tgcgccccgc ccctgcacgc acagcaggcc caggcgaagc
361 ggctgggacg ccccagccca gccggagcgc cacggcatcc gagcgggagc cggagcccga
421 gcgggaccgg agctggagcc gaagctggag ccggcactgc ggcgcacgga gcggagcgcc
481 gcagccaagc cgagcgagta gaggggcctc ccccctcaag aagtcagagc tgtgctcgtg
541 ggcaggctgg ctccgctgtt ctgctccaag gattacatgt ccttcaaacg cccttgcccc
601 ttagcacgat acaaccgtac cagctatttc taccctacca cgttctccga gagctctgag
661 cacagccacc tgctggtgtc tccggtgctg gtggcgagcg ctgtcatagg tgtggtcatc
721 actctctcct gcatcaccat cattgtggga agcatcagaa gggacagaca ggcccggatc
781 cagcgacacc accatcgtca ccgccgccat catcaccatc accgccaccg caggcgccga
841 caccgagaat acgcatctgg aggacacaca cacagccgtt ctagccccca ggatgcccta
901 tgccctgcag ccctgctgag gactggccac cgcccttgga cgtcagctcc gagggggatg
961 tggatgtcac agtgctctgg gagctgtacc cagattctcc accaggctat gaggaatgca
1021 tgggaccagg ggccactcag ctgtatgtcc ccacggatgc accaccgccc tactccatga
1081 ctgactcctg tcccaggctg aatggcgccc ttgactcaga cagcggccag agccgcagcc
1141 accgtcagca agagcagagg acccaggggt cagagcagac tccacactgt ctccatggac
1201 acactgccac cttatgaagc tgtgtgtggg acaggctctc catctgacct gctgccattg
1261 ccaggaccag aaccatggcc aagtaactcc cagggctcac ccatcccaac ccaggctccg
1321 atgcccagcc ctgaaaggat tgtgtgagtg gccaaggctc ataaattccg ctggtctttc
1381 caggctaccc tctctcctcc aggcatacag gtgcacacac aacccatgca catgcatata
1441 tatgactatc aatatatact gacatatccc caagtgctta cactgacaca acccacacat
1501 atgtagacac ctgcatatgc acatgtccca ctactacaca aactcacctg ggaaggtttt
1561 ctttggatga ggtgttccct acatggtatc tcttcctccc cagcctggtg cctggtggcc
1621 gtgcctctct gaacagtgct gggcagaggt gagataggaa acccaatttt ctatcctctc
1681 cccagcctcc tctaggctat ggccacaatc tgattctcct gcagagactg cttggtcagc
1741 ttcctgccat aactcctacc ccagggctta tcctattggg agctgagaca ggtcccaata
1801 aggtcccact gtgcactgtg cctatctctc aactccaggg ctgaagagcc acaatgtcac
1861 cgtcctgcca cttccgaggt gggagagaaa caggtctggt ggcttaggca tgacctggag
1921 gtcctcacag cccatttagc ctgtctcgat gtccttagtg tggcggtgct agtggggtta
1981 gctcagacac ccaccctaag tttcaggggg agacaggccc ttgggcctgt atcgtggagg
2041 aacaacacag ttcttctaat gtctgtgcca ggattgagag ctcaagagaa acaaggtgtg
2101 ggcagcccca tacacacata atgcttccta gacatcactc agaggaggca cagaagagtc
2161 cactgctcag taagtgccca gccagctctg gtgacctggg tgtaagaggt ctcagaccaa
2221 ccaaagagcc agcgctgtca tccagggtgg taactcccag ctggggactg ggctgatgaa
2281 gtctggcctt gcctctctgg gatatacaca gagacaacac acacacatgt accccacgaa
2341 aaaaaaaaaa aaaaaaaaaa agcaaaaaaa aaacaaaaaa aacttcatgt cactatgaga
2401 ccagtgtctg ttgccacaat cccatcacgg aagcaggtgt gtggaggcag ccagttggag
2461 ataggctcag atattagcct ttgagctcca gcgatgtgat ctccatcgaa gactatataa
2521 ggtgacgagg ccatctttga agaccaggct tgccaaagct aagcaccttt gaggaggatc
2581 ctgtcagcac tgccgctggc agggagtgag acctcctgcc tcccggactc ctaccttctg
2641 agggtcatcc cagaagagca gacccatccc cactgaaccc cttcccacat tcaactcctc
2701 caatgaaggg ctaagaaaat tcatcaatcc ctttcctaag cagaggggta gcaaggattt
2761 ttattttcta tagagaaagc atttattctg atgcagagcc gaaagggccc aaccaccagt
2821 tctgtagcat ctaggcggca gcggctgcag gctgcgggca gcaccctaga gtcccaggcc
2881 tgggggaggg agccttgttt acaagccctt ttgcccacct ttgtggcgtt ctgctttcta
2941 ggcaaagatg tctgtctgtg gtactgtcca gcctttaaaa cacaccccgg ggatgagact
3001 ctttttaaga aaggcagtct gtttctagag ctctggaaag tggtgggggc agaaaaacat
3061 ccccgcctat tcaccacgtc ggagggatct gcggaacagc ttttctcctt cctaggttag
3121 gctgaataag cagcaatgta tcttttctgt actcaaaata aatgctcatt atcaac
//