LOCUS       AK134620                1502 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330502D15 product:nuclear VCP-like, full
            insert sequence.
ACCESSION   AK134620
VERSION     AK134620.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
            Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
            Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=6330502D15
FEATURES             Location/Qualifiers
     source          1..1502
                     /clone="6330502D15"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:6330502D15"
                     /db_xref="MGI:3536419"
                     /db_xref="taxon:10090"
                     /dev_stage="adult"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /sex="male"
                     /strain="C57BL/6J"
                     /tissue_type="medulla oblongata"
     misc_feature    1..1502
                     /note="nuclear VCP-like (MGD|MGI:1914709 GB|NM_026171,
                     evidence: BLASTN, 100%, match=350)"
                     /note="putative"
BASE COUNT          415 a          305 c          306 g          476 t
ORIGIN      
        1 atcagctgct tacagagatg gatggcttag aaacacgcca gcaagttttt attttggctg
       61 ccaccaatag accagatatc attgaccctg ccattctgcg cccaggccgc ctggacaaaa
      121 cgctctttgt gggtttgcct cccccagcag accgtgttgc catattaaag actattacaa
      181 aaaatggcac caaacctcca ctggatgaag atgtaaattt ggaaacaatt gctaatgacc
      241 ttcgttgtaa ttgctatacg ggtgcggacc tcactgctct ggtacgggaa gcttctctct
      301 gtgccctgag acaagaaata acagctcaga agaatggtgt tggagcaggt atgaccttct
      361 ccaggatgtc tccattctac tttgtcattc tggatattgt aaaacactgc tttaaatagt
      421 gtttctctag cctttcttag aacattgtgt gatgaggatg actttgtttt gatggaacct
      481 ctagaagatt taagaaatat acagttttct acatatcaag atttttttcc tttgaaatat
      541 aaaatcaaat ggcattatgt gttggtcact ggtggagcat tttcttagca tgtgcaaggc
      601 tcaggattct ttccccagca ccacaaagcc agaaagccaa agacagaaat ctgtgtatta
      661 ccttcataga tggatgtgct tcctatttac ctcacatttt gaaagtattt tttatactac
      721 tatttgggta ttgtgtggcc agaaaagatt aaattatgac ctgtactcca gccatgccaa
      781 gtacttttta gctttacttt gcttactttg cctaagtgtc tctgaggtgc tgtgtgctgt
      841 acaagtgtac tcttgttcga acttcaggtg tgcactggtc tcctttcaat gatgtgtgtg
      901 gctgtgtttg tggtgggttg ggtggagaga aatgtgtgca catgatacag gtgccttcag
      961 agaccacaga ggcattaaga tcctcgaggg ctggagttaa cagtggctgt gaaccacctg
     1021 acatggctgc tgggaactga actcagatcc tctacaagag caggatgctc tcttaacacc
     1081 aacccatctc tacagctcca cttctgtgaa tctcaaagct aaatattgtg acaacaacat
     1141 ttgattagca tagatttact ggcacacata catacattta ttagaaagtt tttttttctt
     1201 ttcctgaata atattaagat tcagttgtca aaacttcttt tttttaataa actgtattct
     1261 cttccttttg gacattaatg ataataagca agcttagaac attttattaa caaaaatgag
     1321 agccacattt ggttgtgtac ctttaatccc atgcttaaag ggactggaga gagggtcccg
     1381 agttcagatc ccagcagccg catggtggct cacaaccatc tgtaatgaga tttgctgccc
     1441 tcttttgctg tgtctgaaga cagctacaat gtacttatgt ataataataa aaaataaatc
     1501 tt
//