LOCUS AK134620 1502 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330502D15 product:nuclear VCP-like, full insert sequence. ACCESSION AK134620 VERSION AK134620.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1502) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=6330502D15 FEATURES Location/Qualifiers source 1..1502 /clone="6330502D15" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:6330502D15" /db_xref="MGI:3536419" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="medulla oblongata" misc_feature 1..1502 /note="nuclear VCP-like (MGD|MGI:1914709 GB|NM_026171, evidence: BLASTN, 100%, match=350)" /note="putative" BASE COUNT 415 a 305 c 306 g 476 t ORIGIN 1 atcagctgct tacagagatg gatggcttag aaacacgcca gcaagttttt attttggctg 61 ccaccaatag accagatatc attgaccctg ccattctgcg cccaggccgc ctggacaaaa 121 cgctctttgt gggtttgcct cccccagcag accgtgttgc catattaaag actattacaa 181 aaaatggcac caaacctcca ctggatgaag atgtaaattt ggaaacaatt gctaatgacc 241 ttcgttgtaa ttgctatacg ggtgcggacc tcactgctct ggtacgggaa gcttctctct 301 gtgccctgag acaagaaata acagctcaga agaatggtgt tggagcaggt atgaccttct 361 ccaggatgtc tccattctac tttgtcattc tggatattgt aaaacactgc tttaaatagt 421 gtttctctag cctttcttag aacattgtgt gatgaggatg actttgtttt gatggaacct 481 ctagaagatt taagaaatat acagttttct acatatcaag atttttttcc tttgaaatat 541 aaaatcaaat ggcattatgt gttggtcact ggtggagcat tttcttagca tgtgcaaggc 601 tcaggattct ttccccagca ccacaaagcc agaaagccaa agacagaaat ctgtgtatta 661 ccttcataga tggatgtgct tcctatttac ctcacatttt gaaagtattt tttatactac 721 tatttgggta ttgtgtggcc agaaaagatt aaattatgac ctgtactcca gccatgccaa 781 gtacttttta gctttacttt gcttactttg cctaagtgtc tctgaggtgc tgtgtgctgt 841 acaagtgtac tcttgttcga acttcaggtg tgcactggtc tcctttcaat gatgtgtgtg 901 gctgtgtttg tggtgggttg ggtggagaga aatgtgtgca catgatacag gtgccttcag 961 agaccacaga ggcattaaga tcctcgaggg ctggagttaa cagtggctgt gaaccacctg 1021 acatggctgc tgggaactga actcagatcc tctacaagag caggatgctc tcttaacacc 1081 aacccatctc tacagctcca cttctgtgaa tctcaaagct aaatattgtg acaacaacat 1141 ttgattagca tagatttact ggcacacata catacattta ttagaaagtt tttttttctt 1201 ttcctgaata atattaagat tcagttgtca aaacttcttt tttttaataa actgtattct 1261 cttccttttg gacattaatg ataataagca agcttagaac attttattaa caaaaatgag 1321 agccacattt ggttgtgtac ctttaatccc atgcttaaag ggactggaga gagggtcccg 1381 agttcagatc ccagcagccg catggtggct cacaaccatc tgtaatgaga tttgctgccc 1441 tcttttgctg tgtctgaaga cagctacaat gtacttatgt ataataataa aaaataaatc 1501 tt //