LOCUS AK134590 3386 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
enriched library, clone:6330439B04 product:hypothetical
Proline-rich region profile/Lysine-rich region
profile/EF-Hand-like containing protein, full insert sequence.
ACCESSION AK134590
VERSION AK134590.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3386)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6330439B04
FEATURES Location/Qualifiers
source 1..3386
/clone="6330439B04"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6330439B04"
/db_xref="MGI:3536376"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="medulla oblongata"
misc_feature 1..3386
/note="hypothetical Proline-rich region
profile/Lysine-rich region profile/EF-Hand-like
containing protein (PROSITE|PS50099 PROSITE|PS50318
InterPro|IPR010983, evidence: InterPro)"
/note="putative"
BASE COUNT 1059 a 732 c 721 g 874 t
ORIGIN
1 ggctctagat ccgctggttc cgtaacaaca tcccgttggc ttccctcagg cggcgggacc
61 tgtgtaaccg ccttcctcgg agcgcctgcc cgcctgggct cgcgggctcc ccggtccggg
121 acgccatggc caccaacccg cagccgcagc caccgccgcc cgcgcctccg ccgccgccac
181 cgcaaccaca gccgccgcct ccgccgcctg gccctggggc tggcccggga gcgagcgggc
241 cgggaagcgc gggggctggt gctggggacc cgcagctcgt tgccatgatc gtaaaccacc
301 tcaagagcca ggggctcttc gaccagttcc gcagggactg cctggccgat gtggacacca
361 agcctgccta tcagaatctc aggcagagag ttgacaactt cgttgcaaac cacttggcaa
421 ctcatacatg gagtccccac ctcaacaaga accaactgag aaacaatatc cgacagcaag
481 ttctgaaatc aggaatgctg gagtctggta ttgaccgaat tatttctcag gttgtggatc
541 caaagatcaa ccacacattc aggcctcagg tagaaaaagc tgtgcacgag ttcctggcca
601 cattgaatca caaagaggaa gctgctggca gcacagctcc tgatgatgag aagccagaat
661 cttctgtcat tacccaaggt gctcctgctc ctgggcccag tgctaatgta gccagtgatg
721 ccatgtcaat cttggaaacc ataacttctc ttaaccaaga agctaacgct gccagagctt
781 caacagaaat gtcaaatgcc aaggtcagtg agagaacatc cagaaaactc tcatctcagc
841 caagcactga cgttagcaca gacaaggaga gaggctcaga agatgcgact gagagagaaa
901 aggctacctc tgattctgga ggagatgggc tagaagctgc tctcaagtca gaagaaccca
961 gtgatctccc ttgtccagtg gaagaaacta aaaatcatat gaaagagaat aatagcttac
1021 tgttactaag taaggatgct cagcaggaaa gcactgaccc aaaaattaaa tcaatggaca
1081 aaggagaaaa gaaacccgat ggtaatgaga aaggagagag aaagaaagag aagaaggaaa
1141 agactgaaaa aaaaattgat cactctaaaa ggaatgaaga tacacagaaa gtgaaagatg
1201 agagacaagc aaaggacaaa gaagtggaga gcacaaagct tccttctgaa aagagcaaca
1261 gcagagccag ggctgctgag gggacaaaag aagattgttc tttgttagat tctgatgtgg
1321 atggtctcac tgatatcaca gtcagctctg tccacaccag tgacctttcg tcctttgaag
1381 aagacacaga ggaggaagtt gtcgtgtctg agagcatgga agaaggagag attacatcag
1441 aggatgaaga gaaaaacaag cagaataaag caaaagttca acctggtgat tctagtgatg
1501 gaaaagccag aggcgtacgg catgcttatg ttcacaaacc gtatctttac tcaaagtact
1561 acagtgattc tgatgacgaa ctcacagtgg agcaacggcg gcaatccatt gctaaagaaa
1621 aagaagagag acttttaaga agacgaatca atagagagaa acttgaagaa aaacgaaagc
1681 agaaagcaga aaagacaaaa tcttctaaag tgaagagcca aggcaaaagt actgtggacc
1741 tagaagactc atcagccaag actttggaac ccaaagcccc aagaattaaa gaagtcctta
1801 aagaacggaa agttctagag aagaaagtag ccttaagcaa aagaagaaga aaagattcaa
1861 ggaatgttga tgaaaattcc aaaaagaaac ctcaggctga ggaagagtcc aaagaagccc
1921 tcaaaacaac tgaggtatgt tgttgcggta aatctccaac ccaaataagc ctgggcaatg
1981 aaaacacaac acagttaata tgaatacatg ctgtgcgcct ggactgggca gatctaccgc
2041 tacactacca tcttccccat agaagagacc ccttagaact tgcactttcc ttctcctcct
2101 cctcctcctc ctctgttgtc ctctctcctt tttctcccaa aaccttcagc tccacctccc
2161 cctctttctc tgcccaatca ccagctcgag cctttatttt atacattaag gtgggaagag
2221 gtttacagga aatcacctgc gtgctgactt attccttgtt tggagaaggg aattaacatc
2281 aaatataatt agccccaggg ctgtctgcaa cacttgtctt agtgaaaccc ttgtcaaagc
2341 ccttttgtta gttgtgggtc attcagtatt cttttgcagc aaaacagtat aatatgatct
2401 ttacggtatt atgtcttaaa aaccattcca ctcaacattt ttagcctctt cctattcggc
2461 ctgaattacc tgttgtaata ggttgatgca tatttagttt tgtgtagaga gtacgttctc
2521 ttcccttacc ctcttcaccc tgtttcttat atacagcaat aacacaattg tcagtaagaa
2581 gacgaaagag aaaactaaaa ttgcccagag taggtcccct attttatctc tttggtttcc
2641 acatgtatag agttttttgg aaggggaagt attctaacaa aaaaacaaat ttttttaaga
2701 cttgctcact ttgtgttacc tcttaatgtg cataattatg taacaattga ttaatctact
2761 gaatggatac attctcaatt actttaagca ctggcttgta tgtgacactt aaggttgtat
2821 ccaaaatgtg cacattttaa attgtgaaaa tctatgcagt gaatgtattt ctccctgtat
2881 tgggttattt tcttgggtca gatttagctt taactgaatt taagtcttta tttgtatata
2941 tatatacata tatattttca taatcgtatg ttctgagata gagacactaa tagcttagta
3001 gttgttaata accagtaagt ttctttattc agaaactaga gtcatattta gacatagtcc
3061 tgatatgtta ctgtatatat ttaaatattt aactttcctt tgtgattttt tttttttttt
3121 tggaacttat ctcaggaagt cttgcacatg ttaatgtact aaatgccaaa actggggtgg
3181 agaggaaagt tcaggtactt tgcatcttcc cagaacatat gaatatacat gtatgtttat
3241 gcttatgtca catgtatatg cttacagtgt tactcagtta ctgtatacat ttggaatttt
3301 ataaattttg cacaaatagt ctaaatccat atgacttctg taagtgattt gtgtttctaa
3361 attttaaaaa aaattagtct ttactt
//