LOCUS       AK134378                2948 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 13 days embryo male testis cDNA, RIKEN full-length
            enriched library, clone:6030449F04 product:nuclear receptor
            subfamily 5, group A, member 1, full insert sequence.
ACCESSION   AK134378
VERSION     AK134378.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 2948)
  AUTHORS   Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
            Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
            Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
            Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
            Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
            Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=6030449F04
FEATURES             Location/Qualifiers
     source          1..2948
                     /clone="6030449F04"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:6030449F04"
                     /db_xref="MGI:3536103"
                     /db_xref="taxon:10090"
                     /dev_stage="13 days embryo"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /sex="male"
                     /strain="C57BL/6J"
                     /tissue_type="testis"
     CDS             203..1591
                     /codon_start=1
                     /note="nuclear receptor subfamily 5, group A, member 1
                     (MGD|MGI:1346833 GB|NM_139051, evidence: BLASTN, 99%,
                     match=2903)"
                     /note="putative"
                     /protein_id="BAE22121.1"
                     /transl_table=1
                     /translation="MDYSYDEDLDELCPVCGDKVSGYHYGLLTCESCKGFFKRTVQNN
                     KHYTCTESQSCKIDKTQRKRCPFCRFQKCLTVGMRLEAVRADRMRGGRNKFGPMYKRD
                     RALKQQKKAQIRANGFKLETGPPMGVPPPPPPPPDYMLPPSLHAPEPKALVSGPPSGP
                     LGDFGAPSLPMAVPGPHGPLAGYLYPAFSNRTIKSEYPEPYASPPQQPGPPYSYPEPF
                     SGGPNVPELILQLLQLEPEEDQVRARIVGCLQEPAKSRSDQPAPFSLLCRMADQTFIS
                     IVDWARRCMVFKELEVADQMTLLQNCWSELLVLDHIYRQVQYGKEDSILLVTGQEVEL
                     STVAVQAGSLLHSLVLRAQELVLQLHALQLDRQEFVCLKFLILFSLDVKFLNNHSLVK
                     DAQEKANAALLDYTLCHYPHCGDKFQQLLLCLVEVRALSMQAKEYLYHKHLGNEMPRN
                     NLLIEMLQAKQT"
     regulatory      2926..2931
                     /note="putative"
                     /regulatory_class="polyA_signal_sequence"
     polyA_site      2948
                     /note="putative"
BASE COUNT          618 a          886 c          820 g          624 t
ORIGIN      
        1 ggaggggagg aggaaaggac gatcggacag ggccagtttc cagtccgccg ctgcccgccc
       61 gctgctgggt gaagaagttt ctgagagccc gctagccact gccctacctg aggcctggga
      121 gcctccccac caggaccctg gtgtccagtg tccaccctta tccggctgag aattctcctt
      181 ccgttcagcg gacgccgcgg gcatggacta ttcgtacgac gaggacctgg acgagctgtg
      241 tccagtgtgt ggtgacaagg tgtcgggcta ccactacggg ctgctcacgt gcgagagctg
      301 caagggcttc ttcaagcgca cagtccagaa caacaagcat tacacgtgca ccgagagtca
      361 gagctgcaaa atcgacaaga cgcagcgtaa gcgctgtccc ttctgccgct tccagaagtg
      421 cctgacggtg ggcatgcgcc tggaagctgt gcgtgctgat cgaatgcggg gtggccggaa
      481 caagtttggg cccatgtaca agagagaccg ggccttgaag cagcagaaga aagcacagat
      541 tcgggccaat ggcttcaagc tggagaccgg accaccgatg ggggtgcccc cgccaccccc
      601 tcccccaccg gactacatgt taccccctag cctgcacgca ccggagccca aggccctggt
      661 ctctggccca cccagtgggc cgctgggtga ctttggagcc ccatctctac ccatggctgt
      721 gcctggtccc cacggacctc tggctggcta cctctatcct gccttctcta accgcaccat
      781 caagtctgag tatccagagc cctatgccag ccccccacaa cagccagggc caccctacag
      841 ctatccagag cccttctcag gagggcccaa tgtaccagag ctcatattgc agctgctgca
      901 actagagcca gaggaggacc aggtgcgcgc tcgcatcgtg ggctgtctgc aggagccagc
      961 caaaagccgc tctgaccagc cagcgccctt cagcctcctc tgcagaatgg ccgaccagac
     1021 ctttatctcc attgtcgact gggcacgaag gtgcatggtc tttaaggagc tggaggtggc
     1081 tgaccagatg acactgctgc agaactgttg gagcgagctg ctggtgttgg accacatcta
     1141 ccgccaggtc cagtacggca aggaagacag catcctgctg gttactggac aggaggtgga
     1201 gctgagcaca gtggctgtgc aggctggctc cctgctgcac agcctggtgc tgcgggccca
     1261 agagttagtg ctccagttgc atgcactgca gctggaccgc caggagttcg tctgtctcaa
     1321 gttcctcatc ctcttcagcc tcgatgtgaa attcctgaac aaccacagcc tcgtaaagga
     1381 cgcccaggaa aaggccaacg ctgccctgtt ggattacacc ttgtgtcact acccacactg
     1441 cggggacaaa ttccagcagt tgctattgtg cctggtggag gtgcgggccc tgagcatgca
     1501 ggccaaggag tacctgtacc acaagcattt gggcaacgag atgccccgca acaaccttct
     1561 cattgagatg ctgcaggcca agcagacttg agcctgggtg ccaggcagcg ggcaataggc
     1621 agggatgcca ctgcctccaa aagactcctt gcattaggtg atccaggagc cctgtcacta
     1681 agcccctgcc cctgagctcc agagctgtgt gtttgggcaa ggatgggcgg ggattggccg
     1741 gggcaggttg cctttactag ccattggcct gtgtccgcca cttggagtgc cccaaagggg
     1801 gcttctaacc attccttcct ccatcagccc ccagcttttt ttcctggtat ctgaggtccc
     1861 aggaggaggc tcaggattcc ctggtgggtc tggatgtccc ttgggtcaga ggtcatcctt
     1921 tccctctctc ctgttatcag aggcaaagga aggtctacag gcatcaatga gggcaaagga
     1981 gggggtctcc agactccact gaagcaggaa gtccactgtt gtaaactgag tttgctaaat
     2041 tgggtcccca gaggatacca tgagagtggg tagggcaaaa agagcccttt ccgccctcta
     2101 cccatctaat tctgatcctc tacctgtagg aggactttgg tgtgatcatc cttctcccag
     2161 ggcccggcta cccagggagg aggagtctgg tgtagccaac attcctgccc taaccctgcc
     2221 catcaccagc tggctgggct ggtatttatc tgcaaggttg aagtcactgg gattcttttc
     2281 ctttcaccta gatagtcctt ggaaagtgtg tgagagagaa gtgggcagga gacagactgg
     2341 ggactgagct gggatatggg gactagcatc aaagctttct cctgacatct ctttccaaga
     2401 gtcggggtgg catctgtacc ccacctcacc cccgagaagt gctattgctt gccctctgcc
     2461 tcagccccac taggggaaca acaggaggcc tgctggggct tagagtccgt gcaggtgggg
     2521 atatgggtaa atctaggaga actcacagat ctttatatga ggacagtgct gaggactttc
     2581 tcatggctcc atccttttgg tccctcgcca ctacccttga agctggcttc agttccctgg
     2641 ctgctgcttt gcctcctgaa agccactctg taggaccaag cactcggggg agaggcctaa
     2701 gccatcctct gttccagact ggacatccac tgtctttcct gctttcgcgt cagatttaca
     2761 gcttatgcta ggcccaccca actggacaag gctgtctcct gtcttctact accctggctc
     2821 agcccccacc tctgcccctg aaatgcgtgc tcccaccaag gccagagacc cacagcccca
     2881 agacaagaag tgcccttata aacccctgca gccctgcagc cctgaaataa attttgcaat
     2941 tagtttcc
//