LOCUS AK132815 1304 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male testis cDNA, RIKEN full-length enriched
library, clone:4930417B17 product:hypothetical protein, full
insert sequence.
ACCESSION AK132815
VERSION AK132815.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1304)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=4930417B17
FEATURES Location/Qualifiers
source 1..1304
/clone="4930417B17"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:4930417B17"
/db_xref="MGI:3533961"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="testis"
CDS <1..551
/codon_start=3
/note="hypothetical protein (evidence: CDS)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAE21375.1"
/transl_table=1
/translation="RAPASLLPCGPSQHLPGDTARRAPRGRGSRFSLSLSPVPSGPGC
SFAQSRLRTRPTARAASSPLATRLTGLAPLGPRSAHYPGRTARTPHTQPLRPGKDRGQ
GGDPIADRAAGLGLLARVPASGADSAGIFKLSLLGLSQREKTETTPGRKIHLRTAGSL
RLLGADRRKTTSPIGLCALGVV"
regulatory 1283..1288
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1304
/note="putative"
BASE COUNT 269 a 384 c 329 g 322 t
ORIGIN
1 gaagggcccc ggcgtcgctg cttccgtgcg gtccgtcaca gcatctcccg ggagacacgg
61 cccggcgtgc gccccggggg cggggaagcc gcttctcgct cagtctgtcg ccggtcccct
121 caggccccgg gtgctccttc gcccaatccc ggcttcgaac tcgtcccacc gcccgcgccg
181 cgtcctcccc gctggcgact cgacttactg ggctggcacc gctcgggccg cgctctgcgc
241 attaccccgg gcgcactgcc cgaaccccac acacacagcc tctccgccca gggaaggatc
301 gtggccaggg cggggatccg atcgcagatc gcgctgcggg gctcggactt ctcgcgaggg
361 ttccggcctc tggcgccgac tccgcgggaa ttttcaaact ttccctacta ggcctttcgc
421 aaagggagaa aaccgagacg acgccgggaa gaaagattca tttacgtaca gcagggtctc
481 tccgcctcct aggagcagat aggcgaaaga ctacaagtcc catagggctt tgtgcgctgg
541 gcgtagtgta gggcgtgtcc ggctttgcgg agcaagggcc ggcctaatct agtggcggtt
601 cctgctggca gccaagcgat aatctttccg tctatgactg ctgctcttgc ctccgttttt
661 tccgttctgt gctccaactc ttcaaggaaa cgcacacaca cacacaaaac ccagacttac
721 tgagaaactc ttactctcat tttttttttt tttctcaaaa agcagagagt tcaggtcgcc
781 tagcctaatc ttttgtcata tatctgacgc tgggtaattc tgctggcaga gcttcgtgct
841 tggcatgcac gaagctgtag gttccattat gccaaaccta tgttttcttt tcgatttgtt
901 agtattgaga gacgaggagt tgggcagacc cttagtagac aaacagggac atgagccatg
961 gcgaatttcc aagatggcca gcttttttta acctcctgat ttgagacaaa aacctggcaa
1021 gcttttatca tctacctgca ggtcacctgc tgatggactg gttcaataag ttcaaagcct
1081 gattagaaca cgttacacaa ctgtagtgga ccgatcaacc atccatcctt tctgccttca
1141 aactgaccaa cactaaagta ggtcagggag gttttagagg ttttacaacc cccaggcctc
1201 aagaagagac tggatttttc agcttctcaa atcccctctc tgttttgtag aaggtctttt
1261 tctctgtgtg tttactgcct gcaataaacg cctttttaac tgcc
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