LOCUS AK131960 2467 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410142I20 product:endometrial bleeding associated factor, full insert sequence. ACCESSION AK131960 VERSION AK131960.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2467) AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K., Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S., Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M., Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y., Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=2410142I20 FEATURES Location/Qualifiers source 1..2467 /cell_type="ES cells" /clone="2410142I20" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:2410142I20" /db_xref="MGI:3532278" /db_xref="taxon:10090" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" misc_feature 1..2467 /note="endometrial bleeding associated factor (MGD|MGI:2443573 GB|NM_177099, evidence: BLASTN, 99%, match=2374)" /note="putative" BASE COUNT 592 a 592 c 679 g 604 t ORIGIN 1 tgagaccgtc taggtcccaa gaacttttca gggcactttt agggacgcat atatccacga 61 ttcctcctgg gcagcgccat gaagtccctg tggctttgct gggcactctg ggtactgccc 121 ctggctggcc ctggggcagc gatgaccgag gaacaggtcc tgagcagtct actgcagcag 181 ctgcagctca gccaggcccc caccctggac agcgcggatg tggaggagat ggccatccct 241 acccacgtga ggtcccagta tgtggccctg ctgcagggaa gtcacgctga ccgctcccga 301 ggcaagaggt tcagccagaa ttttcgagag gtggcaggca ggttcctgat gtcagagacc 361 tccactcacc tgctagtgtt cggaatggag cagcggctgc cgcctaacag cgagctggtg 421 caggctgtgc tgcggctgtt ccaggagcct gtgcccagaa cagctctccg gaggtttgag 481 aggctgtccc cacacagtgc ccgggctcgg gtcaccattg aatggctgag agtccgtgag 541 gatggctcca atcgcactgc cctcatcgac tctaggctcg tgtccatcca cgagagcggc 601 tggaaggcct tcgacgtgac cgaggccgtg aacttctggc agcagctgag ccggccgagg 661 cagccgctgc tgctccaggt gtggtgcaga gggagcatct ggggccgggg acctggagcg 721 cacacaagtt ggtccgtttc gcggcgcagg ggacgccgga cggcaagggg cagggcgagc 781 cacagctgga gctgcacacg ctggacctca aggactacgg agctcaaggc aattgtgacc 841 ccgaggtacc agtgactgaa ggcacccgat gctgtcgcca ggagatgtac ctggacctgc 901 aggggatgaa gtgggccgag aactggatcc tagaaccgcc agggttcctg acgtatgaat 961 gtgtgggcag ctgcctgcag ctaccagagt ccctgaccat cgggtggcca tttctggggc 1021 ctcggcagtg tgttgcctca gagatgacct ccttgcccat gattgtcagt gtgaaggagg 1081 gaggcaggac caggcctcaa gtggtcagcc tgcccaacat gagggtgcag acctgtagct 1141 gcgcctcaga tggggcgctc atacccaggg ggatagatct gtagtctccc tgtccacaga 1201 tgtattctca gtgagcttgt cctaacttag tgctctcgtc agacctttgc tctacagtct 1261 tggttttctt gtccatcacc cagtttaagc acttacatgg gtaaatcatg tcactccagt 1321 aggacacact gaccccactt agccaaggac atggctatgc agtgaacagg ttcgcatctg 1381 agtctgtttt ctggccagaa ctcagcttaa tgtacaacaa aaccctacgg tgagaacagg 1441 ggaatcaaaa gctcgtttac tcttacaccg tgattactgg catcaacgta ccatgtcagg 1501 gactgcccac agcaggctgg gagggagaca tctcagaagc ctgcggcagc tccttgtgaa 1561 aaaccgttgt tcccatttct cctaacctta gccctagaca agagctgtat agatttcatg 1621 tgtgtgactg cttttcagtt ggccttggtg ttcatagtta ttctatatta tttgactttc 1681 ctactccttt ctccttctgc cctggtgaat tctatgaaac tagatgttcc ttgatgtaat 1741 gattcttaaa caattaaaaa gttgaggcat gggacacagc acagcacagt cctgatggcc 1801 caggtgcatg ctgtagatgt attctgtgtg ctcttatctt ggaaacaatg caataacttt 1861 gcaatgttag ttcagattaa tgtttgactt gcaaagaaag tttgaagaaa ttattagaaa 1921 gtgaaataga gccaacactg ggatcccgaa aagaaaaaag ctattgaagt tatgaaataa 1981 gttttgcaca aaatttgaga gtgtttcctg gataagcaag tatagaatac ataaaatctt 2041 atattagtaa aactaagcca aaacaccggg actcttagga gggtcactgc gtgcaatgtg 2101 cagaagcaga aagctggcag aactgccgag ttaagggtgt acctgagtct ttctggccat 2161 tgcctggcag ctttgcccat gtcatttatt gtcagagctt cacgggaaaa tgcaagtagc 2221 cgacttcgga gctctgagct ctggagtata ataagtcaaa aggtaaagtt taaataatga 2281 taagtttgca ataattatta ttttggccag aggcctggga ataggggaag cttgaaactc 2341 tgggggaaca attataattc ttgattcttt gtgtgatgtg ggtattgttt tgaatttgat 2401 ttggcaacga ttatacaatg tctttttttt cctatctgca tttggagtat caataaaaga 2461 ctggggc //