LOCUS AK131943 1605 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus ES cells cDNA, RIKEN full-length enriched library,
clone:2410018B15 product:left-right determination, factor B, full
insert sequence.
ACCESSION AK131943
VERSION AK131943.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1605)
AUTHORS Arakawa,T., Carninci,P., Fukuda,S., Hashizume,W., Hayashida,K.,
Hori,F., Iida,J., Imamura,K., Imotani,K., Itoh,M., Kanagawa,S.,
Kawai,J., Kojima,M., Konno,H., Murata,M., Nakamura,M.,
Ninomiya,N., Nishiyori,H., Nomura,K., Ohno,M., Sakazume,N.,
Sano,H., Sasaki,D., Shibata,K., Shiraki,T., Tagami,M., Tagami,Y.,
Waki,K., Watahiki,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (30-MAR-2004) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=2410018B15
FEATURES Location/Qualifiers
source 1..1605
/cell_type="ES cells"
/clone="2410018B15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:2410018B15"
/db_xref="MGI:3532224"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
CDS 74..1180
/codon_start=1
/note="left-right determination, factor B (MGD|MGI:107405
GB|Z73151, evidence: BLASTN, 100%, match=1583)"
/note="putative"
/protein_id="BAE20889.1"
/transl_table=1
/translation="MPFLWLCWALWALSLVSLREALTGEQILGSLLQQLQLDQPPVLD
KADVEGMVIPSHVRTQYVALLQHSHASRSRGKRFSQNLREVAGRFLVSETSTHLLVFG
MEQRLPPNSELVQAVLRLFQEPVPRTALRRQKRLSPHSARARVTIEWLRFRDDGSNRT
ALIDSRLVSIHESGWKAFDVTEAVNFWQQLSRPRQPLLLQVSVQREHLGPGTWSSHKL
VRFAAQGTPDGKGQGEPQLELHTLDLKDYGAQGNCDPEAPVTEGTRCCRQEMYLDLQG
MKWAENWILEPPGFLTYECVGSCLQLPESLTSRWPFLGPRQCVASEMTSLPMIVSVKE
GGRTRPQVVSLPNMRVQTCSCASDGALIPRRLQP"
regulatory 1584..1589
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 1605
/note="putative"
BASE COUNT 332 a 463 c 479 g 331 t
ORIGIN
1 ggcgcagact caagaccctt tcaggacacc tcagggacac acacatccaa ggctcctctt
61 cccggacagc accatgccat tcctgtggct ctgctgggca ctctgggcac tgtcgctggt
121 tagcctcagg gaagccctga ccggagagca gatcctgggc agcctgctgc aacagctgca
181 gctcgatcaa ccgccagtcc tggacaaggc tgatgtggaa gggatggtca tcccctcgca
241 cgtgaggact cagtatgtgg ccctgctaca acacagccat gccagccgct cccgaggcaa
301 gaggttcagc cagaaccttc gagaggtggc aggcaggttc ctggtgtcag agacctccac
361 tcacctgcta gtgttcggaa tggagcagcg gctgccgcct aacagcgagc tggtgcaggc
421 tgtgctgcgg ctgttccagg agcctgtgcc cagaacagct ctccggaggc aaaagaggct
481 gtccccacac agtgcccggg ctcgggtcac cattgaatgg ctgcgcttcc gcgacgacgg
541 ctccaaccgc actgccctta tcgattctag gctcgtgtcc atccacgaga gcggctggaa
601 ggccttcgac gtgaccgagg ccgtgaactt ctggcagcag ctgagccggc cgaggcagcc
661 gctgctgctc caggtgtcgg tgcagaggga gcatctgggg ccgggaacct ggagctcaca
721 caagttggtt cgtttcgcgg cgcaggggac gccggatggc aaggggcagg gcgagccaca
781 gctggagctg cacacgctgg acctcaagga ctatggagct caaggcaatt gtgaccccga
841 ggcaccagtg actgaaggca cccgatgctg tcgccaggag atgtacctgg acctgcaggg
901 gatgaagtgg gccgagaact ggatcctaga accgccaggg ttcctgacat atgaatgtgt
961 gggcagctgc ctgcagctac cggagtccct gaccagcagg tggccatttc tggggcctcg
1021 gcagtgtgtc gcctcagaga tgacctccct gcccatgatt gtcagcgtga aggagggagg
1081 caggaccagg cctcaagtgg tcagcctgcc caacatgagg gtgcagacct gtagctgcgc
1141 ctcagatggg gcgctcatac ccaggaggct gcagccatag gcgcggggtg tggcttcccc
1201 aaggatgtgc ctttcatgca aatctgaagt gctcattata ctgggagagc tggggattct
1261 aactccctaa tgggcaatcc ctgtgtgtgc tctttgcttc ctctgaagta gcctcatccc
1321 taaattttta ccttcgagga atgtgactcg ctggcccctg gaggcgctct gacccagtgg
1381 tctctgtcct tcatattgtt cactgcactg tatgcgaagc acttacatgt atagatactg
1441 caaaccaagg acagaatccc caattgccat tgttccctta atttgtcgct gaatctgggc
1501 tgagtcccag tcttgactct ggacctaagc cacaagttgg gcaaacatgt ccaacctagg
1561 caatactggc tttgctagat gtgaataaaa tatgctttgt tttgt
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