LOCUS AK124074 4469 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ42080 fis, clone SYNOV4000249, highly similar
to Nephrocystin-4.
ACCESSION AK124074
VERSION AK124074.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 4469)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (15-JUL-2003) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Suzuki,O., Sasaki,N., Aotsuka,S., Shoji,T., Ichihara,T.,
Shiohata,N., Matsumoto,K., Hirano,M., Sano,S., Nomura,R.,
Yoshikawa,Y., Matsumura,Y., Moriya,S., Chiba,E., Momiyama,H.,
Onogawa,S., Kaeriyama,S., Satoh,N., Matsunawa,H., Takahashi,E.,
Kataoka,R., Kuga,N., Kuroda,A., Satoh,I., Kamata,K., Takami,S.,
Terashima,Y., Watanabe,M., Sugiyama,T., Irie,R., Otsuki,T.,
Sato,H., Wakamatsu,A., Ishii,S., Yamamoto,J., Isono,Y.,
Kawai-Hio,Y., Saito,K., Nishikawa,T., Kimura,K., Yamashita,H.,
Matsuo,K., Nakamura,Y., Sekine,M., Kikuchi,H., Kanda,K.,
Wagatsuma,M., Murakawa,K., Kanehori,K., Takahashi-Fujii,A.,
Oshima,A., Sugiyama,A., Kawakami,B., Suzuki,Y., Sugano,S.,
Nagahari,K., Masuho,Y., Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2003)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: HRI and RAB; annotation: Reverse Proteomics Research
Institute, HRI and RAB.
FEATURES Location/Qualifiers
source 1..4469
/clone="SYNOV4000249"
/clone_lib="SYNOV4"
/db_xref="H-InvDB:HIT000043947"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="synovial membrane tissue from rheumatioid
arthritis"
CDS 1271..4015
/codon_start=1
/note="highly similar to Nephrocystin-4"
/protein_id="BAG53998.1"
/translation="MHPRSLSVAPKWSGGLPGNHPRPLRQEFPLEAGISHLEADLSQT
SLVLETSIAEQLQELPFTPLHAPIVVGTQTRSSAGQPSRASMVLLQSSGFPEILDANK
QPAEAVSATEPVTFNPQKEESDCLQSNEMVLQFLAFSRVAQDCRGTSWPKTVYFTFQF
YRFPPATTPRLQLVQLDEAGQPSSGALTHILVPVSRDGTFDAGSPGFQLRYMVGPGFL
KPGERRCFARYLAVQTLQIDVWDGDSLLLIGSAAVQMKHLLRQGRPAVQASHELEVVA
TEYEQDNMVVSGDMLGFGRVKPIGVHSVVKGRLHLTLANVGHPCEQKVRGCSTLPPSR
SRVISNDGASRFSGGSLLTTGSSRRKHVVQAQKLADVDSELAAMLLTHARQGKGPQDV
SRESDATRRRKLERMRSVRLQEAGGDLGRRGTSVLAQQSVRTQHLRDLQVIAAYRERT
KAESIASLLSLAITTEHTLHATLGVAEFFEFVLKNPHNTQHTVTVEIDNPELSVIVDS
QEWRDFKGAAGLHTPVEEDMFHLRGSLAPQLYLRPHETAHVPFKFQSFSAGQLAMVQA
SPGLSNKKGMDAVSPWKSSAVPTKHAKVLFRASGGKPIAVLCLTVELQPHVVDQVFRF
YHPELSFLKKAIRLPPWHTFPGAPVGMLGEDPPVHVRCSDPNVICETQNVGPGEPRDI
FLKVASGPSPEIKDFFVIIYSDRWLATPTQTWQVYLHSLQRVDVSCVAGQLTRLSLVL
RGTQTVRKVRAFTSHPQELKTDPKGVFVLPPRGVQDLHVGVRPLRAGSRFVHLNLVDV
DCHQLVASWLVCLCCRQPLISKAFEIMLAAGEGKGVNKRITYTNPYPSRRTFHLHSDH
PELLRFREDSFQVGGGETYTIGLQFAPSQRVGEEEILIYINDHEDKNEEAFCVKVIYQ
"
BASE COUNT 857 a 1379 c 1308 g 925 t
ORIGIN
1 ctttccgagg ctcctcccgc gggtggcagc ggacggggcg cgcccctcgg ccagtcctcg
61 gtcctcaggc ttgtggctcc gttgagcacc ggccgccggg cctctgggtc cgtcgagtgg
121 agactctctg aaaagcgtgg gctccgtggc ctccggcgcg gccgcggcgg gtcggtctcc
181 tagcccttgt attttcacac atccctaaac caccctcata tcgtggctgt ggtggaagtg
241 gtcgctgagg gcaagaaacg ggatgggagc ctccagacat tgtcctgtgg gtttggaatt
301 cttcggatct tcagcaacca gccggactct cctatctctg cttcccagga caaaaggttg
361 cggctgtacc atggcacccc cagagccctc ctgcacccgc ttctccagga ccccgcagag
421 caaaacagac acatgaccct cattgagaac tgcagcctgc agtacacgct gaagccacac
481 ccggccctgg agcctgcgtt ccaccttctt cctgagaacc ttctggtgtc tggtctgcag
541 cagatacctg gcctgcttcc agctcatgga gaatccggcg acgctctccg aaagcctcgc
601 ctccagaagc ccatcacggg gcacttggat gacttattct tcaccctgta cccctccctg
661 gagaagtttg aggaagagct gctggagctc cacgtccagg accacttcca ggagggatgt
721 ggcccactgg acggtggtgc cctggagatc ctggagcggc gcctgcgtgt gggcgtgcac
781 aatggtctgg gcttcgtgca gaggccgcag gtcgttgtac tggtgcctga gatggatgtg
841 gccttgacgc gctcagctag cttcagcagg aaagtggtct cctcttccaa gaccagctcc
901 gggagccaag ctctggtttt gagaagccgc ctccgcctcc cagagatggt cggccaccct
961 gcatttgcgg tcatcttcca gctggagtac gtgttcagca gccctgcagg agtggacggc
1021 aatgcagctt cggtcacctc tctgtccaac ctggcatgca tgcacatggt ccgctgggct
1081 gtttggaacc ccttgctgga agctgattct ggaagggtga ccctgcctct gcagggtggg
1141 atccagccca acccctcgca ctgtctggtc tacaaggtac cctcagccag catgagctct
1201 gaagaggtga agcaggtgga gtcgggtaca ctccggttcc agttctcgct gggctcagaa
1261 gaacacctgg atgcacccac ggagcctgtc agtggcccca aagtggagcg gcggccttcc
1321 aggaaaccac ccacgtcccc ttcgacagga gttcccgttg gaggccggta tctcccacct
1381 ggaagccgac ctgagccaga cctccctggt cctggaaaca tccattgccg aacagttaca
1441 ggagctgccg ttcacgcctt tgcatgcccc tattgttgtg ggaacccaga ccaggagctc
1501 tgcagggcag ccctcgagag cctccatggt gctcctgcag tcctccggct ttcccgagat
1561 tctggatgcc aataaacagc cagccgaggc tgtcagcgct acagaacctg tgacgtttaa
1621 ccctcagaag gaagaatcag attgtctaca aagcaacgag atggtgctac agtttcttgc
1681 ctttagcaga gtggcccagg actgccgagg aacatcatgg ccaaagactg tgtatttcac
1741 cttccagttc taccgcttcc cacccgcaac gacgccacga ctgcagctgg tccagctgga
1801 tgaggccggc cagcccagct ctggcgccct gacccacatc ctcgtgcctg tgagcagaga
1861 tggcaccttt gatgctgggt ctcctggctt ccagctgagg tacatggtgg gccctgggtt
1921 cctgaagcca ggtgagcggc gctgctttgc ccgctacctg gccgtgcaga ccctgcagat
1981 tgacgtctgg gacggagact ccctgctgct catcggatct gctgccgtcc agatgaagca
2041 tctcctccgc caaggccggc cggctgtgca ggcctcccac gagcttgagg tcgtggcaac
2101 tgaatacgag caggacaaca tggtggtgag tggagacatg ctggggtttg gccgcgtcaa
2161 gcccatcggc gtccactcgg tggtgaaggg ccggctgcac ctgactttgg ccaacgtggg
2221 tcacccgtgt gaacagaaag tgagaggttg tagcacattg ccaccgtcca gatctcgggt
2281 catctcaaac gatggagcca gccgcttctc tggaggcagc ctcctcacga ctggaagctc
2341 aaggcgaaaa cacgtggtgc aagcacagaa gctggcggac gtggacagtg agctggctgc
2401 catgctactg acccatgccc ggcagggcaa ggggccccag gacgtcagcc gcgagtcgga
2461 tgccacccgc aggcgtaagc tggagcggat gaggtctgtg cgcctgcagg aggccggggg
2521 agacttgggc cggcgtggga cgagcgtgtt ggcgcagcag agcgtccgca cacagcactt
2581 gcgggaccta caggtcatcg ccgcctaccg ggaacgcacg aaggccgaga gcatcgccag
2641 cctgctgagc ctggccatca ccacggagca cacgctccac gccacgctgg gggtcgccga
2701 gttctttgag tttgtgctta agaaccccca caacacacag cacacggtga ctgtggagat
2761 cgacaacccc gagctcagcg tcatcgtgga cagtcaggag tggagggact tcaagggtgc
2821 tgctggcctg cacacaccgg tggaggagga catgttccac ctgcgtggca gcctggcccc
2881 ccagctctac ctgcgccccc acgagaccgc ccacgtcccc ttcaagttcc agagcttctc
2941 tgcagggcag ctggccatgg tgcaggcctc tcctgggttg agcaacaaga agggcatgga
3001 cgccgtgtca ccttggaagt ccagcgcagt gcccactaaa cacgccaagg tcttgttccg
3061 agcgagtggt ggcaagccca tcgccgtgct ctgcctgact gtggagctgc agccccacgt
3121 ggtggaccag gtcttccgct tctatcaccc ggagctctcc ttcctgaaga aggccatccg
3181 cctgccgccc tggcacacat ttccaggtgc tccggtggga atgcttggtg aggacccccc
3241 agtccatgtt cgctgcagcg acccgaacgt catctgtgag acccagaatg tgggccccgg
3301 ggaaccacgg gacatatttc tgaaggtggc cagtggtcca agcccggaga tcaaagactt
3361 ctttgtcatc atttactcgg atcgctggct ggcgacaccc acacagacgt ggcaggtcta
3421 cctccactcc ctgcagcgcg tggatgtctc ctgcgtcgca ggccagctga cccgcctgtc
3481 ccttgtcctt cgggggacac agacagtgag gaaagtgaga gctttcacct ctcatcccca
3541 ggagctgaag acagacccca aaggtgtctt cgtgctgccg cctcgtgggg tgcaggacct
3601 gcatgttggc gtgaggcccc ttagggccgg cagccgcttt gtccatctca acctggtgga
3661 cgtggattgc caccagctgg tggcctcctg gctcgtgtgc ctctgctgcc gccagccgct
3721 catctccaag gcctttgaga tcatgttggc tgcgggcgaa gggaagggtg tcaacaagag
3781 gatcacctac accaacccct acccctcccg gaggacattc cacctgcaca gcgaccaccc
3841 ggagctgctg cggttcagag aggactcctt ccaggtcggg ggtggagaga cctacaccat
3901 cggcttgcag tttgcgccta gtcagagagt gggtgaggag gagatcctga tctacatcaa
3961 tgaccatgag gacaaaaacg aagaggcatt ttgcgtgaag gtcatctacc agtgagggct
4021 tgagggtgac gtccttcctg cggcacccag ctggggcctg tctgtgcccc tcctgccctg
4081 caggctgtcc tccccgcctc tctgcagcct ttcacttcag tgcccacctg gctgacctgt
4141 gcacttggct gaggaagcag agaccgagcg ctggtcattt tgtagtacct gcatccagct
4201 tagctgctgc tgacacccag caggcctggg ttccgtgagc gcgaactccg tggtggtggg
4261 tctggctctg gtgctgccat ctacgcatgt gggaccctcg ttatcgctgt tgctcaaaat
4321 gtattttatg aatcatccta aatgagaaaa ttatgttttt cttactggat tttgtacaaa
4381 cataatctat tatttgctat gcaatatttt atgctggtat tatatctgtt ttttaaattg
4441 ttgaacaaaa tactaaactt ttacacgtc
//