LOCUS AK097718 2399 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ40399 fis, clone TESTI2037081, highly similar
to Homo sapiens transmembrane channel-like 5 (TMC5), mRNA.
ACCESSION AK097718
VERSION AK097718.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2399)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Oshima,A., Takahashi-Fujii,A., Tanase,T., Imose,N., Takeuchi,K.,
Arita,M., Musashino,K., Yuuki,H., Hara,H., Sugiyama,T., Irie,R.,
Otsuki,T., Sato,H., Wakamatsu,A., Ishii,S., Yamamoto,J., Isono,Y.,
Kawai-Hio,Y., Saito,K., Nishikawa,T., Kimura,K., Yamashita,H.,
Matsuo,K., Nakamura,Y., Sekine,M., Kikuchi,H., Kanda,K.,
Wagatsuma,M., Murakawa,K., Kanehori,K., Sugiyama,A., Kawakami,B.,
Suzuki,Y., Sugano,S., Nagahari,K., Masuho,Y., Nagai,K. and
Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2002)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: HRI and RAB; annotation: HRI and RAB.
FEATURES Location/Qualifiers
source 1..2399
/clone="TESTI2037081"
/clone_lib="TESTI2"
/db_xref="H-InvDB:HIT000022572"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="testis"
CDS 223..2334
/codon_start=1
/note="highly similar to Homo sapiens transmembrane
channel-like 5 (TMC5), mRNA"
/protein_id="BAG53520.1"
/translation="MLSDDHVNEIIIQVENVSSGVQSHPSSNQIFQEKVLLDSSINMV
LSISDIDVIDSQTVSKRNDQKGNQVLRFSTSLNESMSQTLHSLECMGIDTPGSSHETV
QGQKLIASLIPMTSRDRIKAIRNQPRTMEEKRNLRKIVDKEKSKQTHRILQLNCCIQC
LNSISRAYRRSKNSLSEILNSISLWQKTLKIIGGKFGTSVLSYFNFLRWLLKFNIFSF
ILNFSFIIIPQFTVAKKNTLQFTGLEFFTGVGYFRDTVMYYGFYTNSTIQHGNSGASY
NMQLAYIFTIGACLTTCFFSLLFSMAKYFRNNFINPHIYSGGITKLIFCWDFTVTHEK
AVKLKQKNLSTEIRENLSELRQENSKLTFNQLLTRFSAYMVAWVVSTGVAIACCAAVY
YLAEYNLEFLKTHSNPGAVLLLPFVVSCINLAVPCIYSMFRLVERYEMPRHEVYVLLI
RNIFLKISIIGILCYYWLNTVALSGEECWETLIGQDIYRLLLMDFVFSLVNSFLGEFL
RRIIGMQLITSLGLQEFDIARNVLELIYAQTLVWIGIFFCPLLPFIQMIMLFIMFYSK
NISLMMNFQPPSKAWRASQMMTFFIFLLFFPSFTGVLCTLAITIWRLKPSADCGPFRG
LPLFIHSIYSWIDTLSTRPGYLWVVWIYRNLIGSVHFFFILTLIVLIITYLYWQITEG
RKIMIRLLHEQIINVSPLGSL"
BASE COUNT 610 a 591 c 528 g 670 t
ORIGIN
1 aaaaaactcc tcaggggtta gatgcaggga gttatgttgt gatttgtgta ggggtggctt
61 tggtgagctc atcctggcat tttaaaaata atgtgaatgg tgtatccctt tgtgatcatc
121 atcacttttt ccctgcgagt cccaatcaat gcgggtgtga ctgctgtatg aagtctcagg
181 aagcccaccc cagtggagaa gaaggcttgc aggaggcagg agatgctgtc cgatgaccac
241 gtgaatgaaa tcatcataca ggttgagaat gtttcctctg gggtccaaag ccacccatcc
301 tcaaatcaga tttttcaaga aaaggtgctg ctagactcaa gcatcaacat ggttttgtca
361 atatctgaca ttgatgtgat agactctcag acagtcagca aaaggaatga ccaaaagggt
421 aaccaggtgc tgcggttttc aacatctttg aatgagtcga tgtctcaaac ccttcatagc
481 ctagaatgca tgggcataga cactcctggt tcttcacatg aaactgttca aggacagaag
541 ttaatcgcat cccttatacc catgacatcc agagacagaa ttaaagccat caggaaccag
601 ccaaggacca tggaagagaa aaggaacctt aggaaaatag ttgacaaaga aaaaagcaaa
661 cagacccatc gtatccttca gctcaattgc tgtattcagt gtctgaactc catttcccgg
721 gcttatcgga gatccaagaa cagcctgtcg gaaattctga actccatcag cctgtggcag
781 aagacgctga agatcattgg aggcaagttt ggaaccagcg tcctctccta tttcaacttt
841 ctgagatggc ttttgaagtt caacattttc tcattcatcc tgaacttcag cttcatcata
901 atccctcagt ttaccgtggc caaaaagaac accctccagt tcactgggct ggagtttttc
961 actggggtgg gttattttag ggacacagtg atgtactatg gcttttacac caattccacc
1021 atccagcacg ggaacagcgg ggcatcctac aacatgcagc tggcctacat cttcacaatc
1081 ggagcatgct tgaccacctg cttcttcagt ttgctgttca gcatggccaa gtatttccgg
1141 aacaacttca ttaatcccca catttactcc ggagggatca ccaagctgat cttttgctgg
1201 gacttcactg tcactcatga aaaagctgtg aagctaaaac agaagaatct tagcactgag
1261 ataagggaga acctgtcaga gctccgtcag gagaattcca agttgacgtt caatcagctg
1321 ctgacccgct tctctgccta catggtagcc tgggttgtct ctacaggagt ggccatagcc
1381 tgctgtgcag ccgtttatta cctggctgag tacaacttag agttcctgaa gacacacagt
1441 aaccctgggg cggtgctgtt actgcctttc gttgtgtcct gcattaatct ggccgtgcca
1501 tgcatctact ccatgttcag gcttgtggag aggtacgaga tgccacggca cgaagtctac
1561 gttctcctga tccgaaacat ctttttgaaa atatcaatca ttggcattct ttgttactat
1621 tggctcaaca ccgtggccct gtctggtgaa gagtgttggg aaaccctcat tggccaggac
1681 atctaccggc tccttctgat ggattttgtg ttctctttag tcaattcctt cctgggggag
1741 tttctgagga gaatcattgg gatgcaactg atcacaagtc ttggccttca ggagtttgac
1801 attgccagga acgttctaga actgatctat gcacaaactc tggtgtggat tggcatcttc
1861 ttctgccccc tgctgccctt tatccaaatg attatgcttt tcatcatgtt ctactccaaa
1921 aatatcagcc tgatgatgaa tttccagcct ccgagcaaag cctggcgggc ctcacagatg
1981 atgactttct tcatcttctt gctctttttc ccatccttca ccggggtctt gtgcaccctg
2041 gccatcacca tctggagatt gaagccttca gctgactgtg gcccttttcg aggtctgcct
2101 ctcttcattc actccatcta cagctggatc gacaccctaa gtacacggcc tggctacctg
2161 tgggttgttt ggatctatcg gaacctcatt ggaagtgtgc acttcttttt catcctcacc
2221 ctcattgtgc taatcatcac ctatctttac tggcagatca cagagggaag gaagattatg
2281 ataaggctgc tccatgagca gatcattaat gtaagtcccc ttggatccct ctgatgtccg
2341 ccctcaccct ttttaaatgc tgtataaaca tcctccaaaa taaagagaat actacaatg
//