LOCUS AK095729 2638 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ38410 fis, clone FEBRA2009289, highly similar
to Contactin-4 precursor.
ACCESSION AK095729
VERSION AK095729.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2638)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Tanigami,A., Fujiwara,T., Shibahara,T., Goto,Y., Hirao,M.,
Shimizu,F., Wakebe,H., Ono,T., Hishigaki,H., Watanabe,T.,
Ozaki,K., Sugiyama,T., Irie,R., Otsuki,T., Sato,H., Wakamatsu,A.,
Ishii,S., Yamamoto,J., Isono,Y., Kawai-Hio,Y., Saito,K.,
Nishikawa,T., Kimura,K., Yamashita,H., Matsuo,K., Nakamura,Y.,
Sekine,M., Kikuchi,H., Kanda,K., Wagatsuma,M., Murakawa,K.,
Kanehori,K., Takahashi-Fujii,A., Oshima,A., Sugiyama,A.,
Kawakami,B., Suzuki,Y., Sugano,S., Nagahari,K., Masuho,Y.,
Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2002)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: HRI and RAB; annotation: HRI and RAB.
FEATURES Location/Qualifiers
source 1..2638
/clone="FEBRA2009289"
/clone_lib="FEBRA2"
/db_xref="H-InvDB:HIT000020584"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 198..2297
/codon_start=1
/note="highly similar to Contactin-4 precursor"
/protein_id="BAG53116.1"
/translation="MRLPWELLVLQSFILCLADDSTLHGPIFIQEPSPVMFPLDSEEK
KVKLNCEVKGNPKPHIRWKLNGTDVDTGMDFRYSVVEGSLLINNPNKTQDAGTYQCTA
TNSFGTIVSREAKLQFAYLDNFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFN
EYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDG
VMGEYEPKIEVQFPETVPTAKGATVKLECFALGNPVPTIIWRRADGKPIARKARRHKS
NGILEIPNFQQEDAGLYECVAENSRGKNVARGQLTFYAQPNWIQKINDIHVAMEENVF
WECKANGRPKPTYKWLKNGEPLLTRDRIQIEQGTLNITIVNLSDAGMYQCLAENKHGV
IFSNAELSVIAVGPDFSRTLLKRVTLVKVGGEVVIECKPKASPKPVYTWKKGRDILKE
NERITISEDGNLRIINVTKSDAGSYTCIATNHFGTASSTGNLVVKDPTRVMVPPSGMD
VTVGESIVLPCQVTHDHSLDIVFTWSFNGHLIDFDRDGDHFERVGGQDSAGDLMIRNI
QLKHAGKYVCMVQTSVDRLSAAADLIVRGPPGPPEAVTIDEITDTTAQLSWRPGPDNH
SPITMYVIQARTPFSVGWQAVSTVPELIDGKTFTATVVGLNPWVEYEFRTVAANVIGI
GEPSRPSEKRRTEEARE"
BASE COUNT 807 a 541 c 615 g 675 t
ORIGIN
1 ctgcgtggat gatcagtgta gtggaagcag ggacttgctg agagctgaaa tctctgtttg
61 atttgctgta acatgtaaag cgaaactggg acattttact ttacagtcta ttaaaggtta
121 tacaaaactt aaaagaagca gcaattctat tcgcttgtta ttggacttga aactcccttt
181 gacctcggaa actgaagatg aggttgccat gggaactgct ggtactgcaa tcattcattt
241 tgtgccttgc agatgattcc acactgcatg gcccgatttt tattcaagaa ccaagtcctg
301 taatgttccc tttggattct gaggagaaaa aagtgaagct caattgtgaa gttaaaggaa
361 atccaaaacc tcatatcagg tggaagttaa atggaacaga tgttgacact ggtatggatt
421 tccgctacag tgttgttgaa gggagcttgt tgatcaataa ccccaataaa acccaagatg
481 ctggaacgta ccagtgcaca gcgacaaact cgtttggaac aattgttagc agagaagcaa
541 agcttcagtt tgcttatctt gacaacttta aaacaagaac aagaagcact gtgtctgtcc
601 gtcgaggtca aggaatggtg ctactgtgtg gcccgccacc ccattctgga gagctgagtt
661 atgcctggat cttcaatgaa tacccttcct atcaggataa tcgccgcttt gtttctcaag
721 agactgggaa tctgtatatt gccaaagtag aaaaatcaga tgttgggaat tatacctgtg
781 tggttaccaa taccgtgaca aaccacaagg tcctggggcc acctacacca ctaatattga
841 gaaatgatgg agtgatgggt gaatatgagc ccaaaataga agtgcagttc ccagaaacag
901 ttccgactgc aaaaggagca acggtgaagc tggaatgctt tgctttagga aatccagtac
961 caactattat ctggcgaaga gctgatggaa agccaatagc aaggaaagcc agaagacaca
1021 agtcaaatgg aattcttgag atccctaatt ttcagcagga ggatgctggt ttatatgaat
1081 gtgtagctga aaattccaga gggaaaaatg tagcaagggg acagctaact ttctatgctc
1141 aacctaattg gattcaaaaa ataaatgata ttcacgtggc catggaagaa aatgtctttt
1201 gggaatgtaa agcaaatgga aggcctaagc ctacatacaa gtggctaaaa aatggcgaac
1261 ctctgctaac tcgggataga attcaaattg agcaaggaac actcaacata acaatagtga
1321 acctctcaga tgctggcatg tatcagtgtt tggcagagaa taaacatgga gttatctttt
1381 ccaacgcaga gcttagtgtt atagctgtag gtccagattt ttcaagaaca ctcttgaaaa
1441 gagtaactct tgtcaaagtg ggaggtgaag ttgtcattga gtgtaagcca aaagcgtctc
1501 caaaacctgt ttacacctgg aagaaaggaa gggatatatt aaaagaaaat gaaagaatta
1561 ccatttctga agatggaaac ctcagaatca tcaacgttac taaatcagac gctgggagtt
1621 atacctgtat agccactaac cattttggaa ctgctagcag tactggaaac ttggtagtga
1681 aagatccaac aagggtaatg gtaccccctt ccggtatgga tgtcactgtt ggagagagta
1741 ttgttttacc gtgccaggta acgcatgatc actcgctaga catcgtgttt acttggtcat
1801 ttaatggaca cctgatagac tttgacagag atggggacca ctttgaaaga gttggagggc
1861 aggattcagc tggtgatttg atgatccgaa acatccaact gaagcatgct gggaaatatg
1921 tctgcatggt ccaaacaagt gtggacaggc tatctgctgc tgcagacctg attgtaagag
1981 gtcctccagg tcccccagag gctgtgacaa tagacgaaat cacagatacc actgctcagc
2041 tctcctggag acccgggcct gacaaccaca gccccatcac catgtatgtc attcaagcca
2101 ggactccgtt ctccgtgggc tggcaagcag tcagtacagt cccagaactc attgatggga
2161 agacattcac agcgaccgtg gtgggtttga acccttgggt tgaatatgaa ttccgcacag
2221 ttgcagccaa cgtgattggg attggggagc ccagccgccc ctcagagaaa cggagaacag
2281 aagaagctcg tgagtagcac ccgagattca gatcatctgt tctgccagct gctgttcctt
2341 aggaaaagcg tttgaattct tgctgctctt cagcgctcat gcggctctgt gttagctcac
2401 cctgcccttt aaatgtttat aatgatagaa atcaggccag gagaagccca gctgaacacg
2461 caacgggttt caatcaagag ttgttttctt cattaggtcc acttgtacag caagagacac
2521 acggtgctta gtcctctcaa aagccagccc tttcttcatt ggttcatttg tcaccaagat
2581 tctaacagaa tttcaaaaaa aaaatcccac atttcaaata aaattatctc acataagt
//