LOCUS AK095496 3166 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ38177 fis, clone FCBBF1000115, highly similar
to Protocadherin beta 17 precursor.
ACCESSION AK095496
VERSION AK095496.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3166)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (04-JUL-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Tanigami,A., Fujiwara,T., Shibahara,T., Goto,Y., Hirao,M.,
Shimizu,F., Wakebe,H., Ono,T., Hishigaki,H., Watanabe,T.,
Ozaki,K., Sugiyama,T., Irie,R., Otsuki,T., Sato,H., Ota,T.,
Wakamatsu,A., Ishii,S., Yamamoto,J., Isono,Y., Kawai-Hio,Y.,
Saito,K., Nishikawa,T., Kimura,K., Yamashita,H., Matsuo,K.,
Nakamura,Y., Sekine,M., Kikuchi,H., Kanda,K., Wagatsuma,M.,
Murakawa,K., Kanehori,K., Takahashi-Fujii,A., Oshima,A.,
Sugiyama,A., Kawakami,B., Suzuki,Y., Sugano,S., Nagahari,K.,
Masuho,Y., Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2002)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: HRI and RAB; annotation: HRI and RAB.
FEATURES Location/Qualifiers
source 1..3166
/clone="FCBBF1000115"
/clone_lib="FCBBF1"
/db_xref="H-InvDB:HIT000020351"
/db_xref="taxon:9606"
/dev_stage="fetal"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 351..2555
/codon_start=1
/note="highly similar to Protocadherin beta 17 precursor"
/protein_id="BAG53070.1"
/translation="MWKTWLQGGARVIFDDYKPYLRLDPQNGDLLLNEQLDREALCDL
TEPCILHFQVLFENPLQFFRAELLVKDINDHTPTFLNNHMLLKISEGATLGTLFQIDS
AQDLDVGKNGVQNYTISPNPHFHLKLRDSDEGRKYPELVLDQSLDREKVSEFSLTLTA
VDGGSPPRSGTTLINVVVLDISDNAPEFEKPVYEVHVPESSPLDSLIIKASATDLDAG
INGELSYSFSHVSRDVRKTFEIHPISGEVYLKAPLDFEIIQSYIINIQAIEGGSLSGK
SSILVRVVDVNDNPPEIAMTSLTSPIPENSSPEMVVAVFSIRDQDAGDNGRTVCSIQD
NLPFVLKPTFKNFYALVTEHPLDREVRNEYNITITVTDLGTPRLKTEHNITVLVSDVN
DNAPIFTQTSYTLFVRENNSPALHIGSVSATDRDSGTNAQVTYSLLPPQDPHLPLTSL
VSINADNGHLFALRSLDYEALQEFGFRVGAADHGSPALSSEVLVRVLVLDANDNSPFV
LYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATEPGLFGVWA
HNGEGRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVEGFSQPYLPLTEAA
PSQAQADSLTVYLVVALASVSSLFLFSVFLFVAVRLCRRSRAASMGRCSVPECPFPGH
LVDVSGTGTLSQSYQYEVCLTGGSGANEFKFLKPVIPNLLSRDSEMEKAPPF"
BASE COUNT 781 a 776 c 795 g 814 t
ORIGIN
1 gaaaagcgct ggaataccag gagaaaatag tctttcaaaa ggtagggcac catcaacacc
61 ttcgcgacag gattaagagt ttctagattc ccaaaggtcc aggctgatag gtgagaggag
121 caactttaag agctgctaga gactgagttg aaacgtttac gccagaaaga cgtttggcta
181 aggagctatg gagccgggaa agggaagagc tcagcggaca aggcaagtgc tgcttttctt
241 tgttttcctg ggagggtctt tggtgtgttc tgagaccggg agctattcca tagcagagga
301 aatggaggtc ggtaccttta tagccaacgt ggtgaaagac atgggtttgg atgtggaaga
361 cctggctgca agggggggcc agagtcatct ttgacgacta taaaccttat ttgcgattgg
421 atccacagaa tggcgacttg ctcttaaacg agcagctgga ccgggaggca ctttgtgatc
481 tcacagagcc atgtatattg catttccagg tgttatttga aaatccgttg caattttttc
541 gtgctgagct tttggtcaaa gacataaatg atcacactcc cacgttccta aacaatcata
601 tgcttctaaa aatctccgaa ggtgctactc taggaacctt attccaaata gatagtgcgc
661 aggacttgga tgtgggaaag aatggtgttc aaaactatac aataagtccc aatccccatt
721 tccaccttaa attacgggat agcgatgagg gcagaaaata tccagagttg gtactggacc
781 aatccctgga tcgagaaaag gtgtctgagt ttagtttaac gctaacagcc gtggatggcg
841 ggtctccgcc caggtctggg actacactga ttaacgttgt ggtcctggac atcagtgaca
901 atgcccctga atttgagaag ccagtctatg aagttcatgt acctgagagc agccctctgg
961 actccttgat catcaaagcg tctgctacag atttagatgc aggaataaat ggagaactgt
1021 cttattcatt ttcccacgtc tccagagatg tacggaaaac atttgaaatc catccaattt
1081 ctggcgaagt ctatttaaaa gcccctctag atttcgagat tattcaatct tatatcataa
1141 atattcaggc cattgaaggt gggagccttt ctggaaaatc aagcatttta gttcgggttg
1201 tagatgtgaa tgacaacccg ccagaaatag ccatgacatc tcttaccagc cccataccgg
1261 aaaactcttc acctgagatg gtggtcgctg ttttcagcat acgagaccaa gacgctggag
1321 acaatgggag aacagtttgc tcaattcagg acaacctccc ctttgtcttg aagcctacct
1381 tcaagaattt ttacgctctg gtaacagagc acccactgga cagagaggtc agaaatgaat
1441 ataacatcac catcaccgtg accgacttgg ggacacccag gctgaaaacc gagcacaaca
1501 taaccgtgct ggtctccgac gtcaatgaca acgcccccat cttcacccaa acctcctaca
1561 ccctgttcgt ccgcgagaac aacagccccg ccctgcacat cggcagcgtc agcgctacag
1621 acagagactc aggcaccaac gcccaggtca cctactcgct gctgccgccc caggacccgc
1681 acctgcccct cacctccctg gtctccatca acgcggacaa cggccaccta ttcgccctca
1741 ggtctttgga ctacgaggcc ctgcaggagt tcgggtttcg cgtgggcgcc gcagaccacg
1801 gctccccggc gctgagcagc gaggtgctgg tgcgcgtgct ggtgctggac gccaacgaca
1861 actcgccctt cgtgctgtac ccgctgcaga acggctcggc gccctgcacc gagctggtac
1921 ctcgggcggc cgagccgggc tacctggtga ccaaggtggt ggcggtggac ggcgactcgg
1981 gccagaacgc ctggctgtcg taccagctgc tcaaggccac ggagcccggg ctgttcggcg
2041 tgtgggcgca caatggcgag gggcgcaccg ccaggctgct gagcgagcgc gacgcggcca
2101 agcacaggct ggtggtgctg gtcaaggaca atggcgagcc tccgcgctcg gccaccgcca
2161 cgctgcacgt gctcctggtg gagggcttct ctcagcccta cctgcctctc acggaggctg
2221 ccccctccca ggcccaggcc gactccctca ccgtctacct ggtggtggcg ttggcctcgg
2281 tgtcgtcgct cttcctcttc tcggtgttcc tgttcgtggc ggtgcggctg tgcaggagga
2341 gcagggcggc ctcgatgggt cgctgctcgg tgcccgagtg tccctttcca gggcatctgg
2401 tagacgtgag cggcaccggg accctatccc agagctacca gtacgaggtg tgtctgacgg
2461 gaggctcagg ggcaaatgag ttcaagttcc tgaagccggt gattcccaat ctcctgtccc
2521 gcgacagcga aatggagaaa gccccacctt tctgaatggc gtggaatgca attagggatc
2581 tgattatgat gcagaacttt tagaatgagt ctatttcttt gaaatcttat tcattgttat
2641 gcagagtttt tcattttggg taactgcatt ttactcaaga gttttcagaa gttacaagaa
2701 tttaagtcta ttttttgttg ttttaaccgt gaaaaaattg agagccggaa tttgcttagt
2761 cattgttttg aaatacaacc tcaaataata tattcacaaa cacattattt tcccttcaag
2821 tttaatcgca cactgggctc attcatattt tctgagtgtt ctgactgtgg atcctctatc
2881 caaagcagtt tttatataat tgagaatatt attatagagg taaatgcatg atatgaataa
2941 aaacataatt gcttgttatc tggttaggtt ggtttctgag atgttatcta atttaggttt
3001 ctttcttaaa aacctataat cttttcattc tacttttctg gcaaacattg cagagaattt
3061 ttcctgtact tagggttttt tttccataat tatttgtgaa ccatatatat gctagtagaa
3121 gttgttttat ttaaataaat tcaaaacctt gtttggatta agatgt
//