LOCUS AK089989 2996 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus bladder RCB-0544 MBT-2 cDNA, RIKEN full-length
enriched library, clone:G430046G23 product:hypothetical protein,
full insert sequence.
ACCESSION AK089989
VERSION AK089989.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2996)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=G430046G23
FEATURES Location/Qualifiers
source 1..2996
/cell_line="RCB-0544 MBT-2"
/clone="G430046G23"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:G430046G23"
/db_xref="MGI:2428895"
/db_xref="taxon:10090"
/mol_type="mRNA"
/organism="Mus musculus"
/tissue_type="bladder"
misc_feature 1..2996
/note="hypothetical protein (evidence: rsCDS)"
/note="putative"
BASE COUNT 898 a 638 c 676 g 784 t
ORIGIN
1 cggctcggcg aggcgtcccc tgtcctcctc cgggcccggc ccggggtgcg ggcgaggccc
61 cgaggccccc tcccgccggg ctcgggcgga gccggacggc ctggcgggag caggcgccgc
121 gggccgcgag ctcctcattc gaacctccct cgcagacagt ctccgcccca caatgcaccg
181 gggcgggcag cctttgaaaa agcggcgcgg ctcgttcaag atggcggagc tcgaccagtt
241 gcctgacgag agctcttcag caaaagccct tgtcagttta aaagagggaa gtttatctaa
301 cacatggaaa aaagtacagt tctttacaga aaactcctgt ttggaaaggc aggaatgcgg
361 gccctgctgt agaaatgcct ttcagaaatt caaaaagaag tcgactcttt tctgatgaag
421 atgacagaca aataaataca aagtcaccta aaagaaacca gagagtggca atgatcccac
481 agaaatttac agcaacgatg tcaacaccag ataagaaagc atcacagaag attggttttc
541 gattacggaa cctactcaag cttcccaaag cacataagtg gtgcatatat gagtggttct
601 actcaaacat agacaagcca ctttttgaag gagataatga cttttgtgta tgcctaaagg
661 aatcctttcc taatttgaaa acaagaaaat taacaagagt agaatgggga aaaatcagga
721 gactgatggg aaaacctcgg agatgttctt ctgcattttt ggaggaagag agatcagccc
781 ttaaaacaga aggggcagaa aatcaggctg ttacaacaaa ggaaagttgc agatgtttca
841 cagttcaaag atctccccga tgaaatccct ctacccctgg ttatgggaac caaagttaca
901 gcgcggttac gtggcattca cgatggcctg tttactggtc agatagatgc agtggacact
961 cttaatgcta cttacagagt aactttcgat aggacaggcc ttgggactca caccattcct
1021 gactatgaag ttcttagtaa tgagcctcat gagacaatgc caatctctgc ctttggacaa
1081 aaacagcggc cttctcggtt ttttatgacc cccccacggt tacattatac ccctcctctc
1141 cagtcaccaa ttacagatgg cgatccttta ctggggcagt caccttggag aagtaaagtt
1201 tctggctctg acacggagac gttaggaggc tttccagtgg aattccttat ccaggtgact
1261 aagttatcaa aaattctcat gattaaaaaa gagcatataa agaaattaag ggagatgaac
1321 acagaagcag aaaagctgaa atcctattcc atgcccattg gcattgagtt tcagcggaga
1381 tacgcaacga tcgtcctgga gcttgagcag ctgaacaagg acctgaacca agttctgcat
1441 aaagttcagc agtattgcta tgagccttgc accagaccag ggactccagc ctgccgatca
1501 gccaacagac atgagacgga ggtgtgagga agaagcccag gaaatcgtcc ggcaagccaa
1561 ctctgcttcc ggacagccct gtgtagaaaa cgaaaatctg acggacttga tctccaggct
1621 cactgcgatt ttattacaaa ttaagtgtct ggcagaggga ggagacctga attcctttga
1681 attcaaatct ctcacagatt cattaaatga cataaaaaac acaatagatg cttctaatat
1741 cagttgtttt cagaataacg tagaaatcca tgttgcacat atccagagtg gcctgagtca
1801 gatgggaaac ttacacgcct ttgcagccaa caacacgaac agagactgag cacaggattc
1861 tggtacccag ctgcacacag ccatggtctg aggagtcctg gtccttaacc catgcttcca
1921 acaccagata acctagctgc tggaaaaccg gagaactgta catctccaga tacggctttt
1981 taatacactc tactgcttct tcaaccagcc ttgtgctgac cagcatttat ttattgttct
2041 tttattatcc agatgcagta gtgttgctta tatttcctgt ttatcagcca acatttttaa
2101 ccggaaactc tctggacgta ctatcccatg gaggataaac cactgtttta gtgcatgcat
2161 gaattctgct cagcacatgc agacgactcc tgtgacagac agagaacatg aagaagcacg
2221 gtctttccat gcatgatggt gggaatccca tccgagagtc accggtccag tggagttagt
2281 tggcattata tcttgggctg caaaatagac gtcatgagtg tgagagtccg agtcgtaagg
2341 aaccccctgg ggtacagatg ggaaacacgg acttaagtgt atgtttcata tactgacagt
2401 gggacatggt tctatagatc aagttataat aataaatatt ttaatttatc ataatttata
2461 aaagctttgt tgtttatcag cagaggaaat gaaggagccg gaggaactgt actgtgcccc
2521 gctggatccc agcgggtgga cttggcatgc cttccatgat tcagggcaaa agtgttaagt
2581 gttgagactt attttaaaaa agactgatga cacactattt tcgtattttt ttgtttattt
2641 gcacaacttt aaaccagatg actggttaaa attgaacagt acacaattta taaagtgaaa
2701 atcttttata aggaaagcat atgacatgtg aatacacagg gaggtttggc tttggttgtt
2761 ttgtttggtt ttgttttttc tttttaagaa aaaccctgcc taaaataatc ttgtaaaaag
2821 tatgtatttt aaaatttttg ttttaatata gaatattata aagccaaaat ataattgttt
2881 tcagatttgg agtttaaaat agagctatag aggtggttct gattctttga cgtctcataa
2941 aatgagactt ttgtatatta atgtataata aaactgaaat aagattattt tccttg
//