LOCUS AK088681 2130 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430023H19
product:unclassifiable, full insert sequence.
ACCESSION AK088681
VERSION AK088681.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2130)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430023H19
FEATURES Location/Qualifiers
source 1..2130
/cell_type="thymic cells"
/clone="E430023H19"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430023H19"
/db_xref="MGI:2427578"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
misc_feature 1..2130
/note="putative"
/note="unclassifiable"
BASE COUNT 538 a 479 c 505 g 608 t
ORIGIN
1 ggcttttcat aaatgacttt cagtagtaat gacattttaa aatatattta tttgcagtat
61 ttgaaacctt atgagccatg tgcccaaata caatgtaatt cctgcttcca gaaaggaaaa
121 atacatttta aaatcaagat tttattaaga gctttcattt taaagcttgt acctctgtaa
181 tgatcctccc cacctccctc taatcacctc agctcttgcc agaccttatt tttgcatcat
241 aactgttcca tttgtatttg atttctttaa taatatattt taatggattt ggagaggtga
301 ctaggtagaa gtcactgaga atcaggaaac cagtcagtca ctgttagaaa aacaacgcaa
361 gagcagcccg cgagtgctca cttggtgcag aattcgctgc agcactgacc actctggacg
421 gggagggagc ccagcacaag ccgttgcatg cagtacccag cgactctgga agctcctgct
481 ctgtatgaga gggcgccatt aacctagtct gtgctcatca tatcttgcag ggtggtgtga
541 atctggcaat ccaacctctt tcctagttac actttagggt tggtatccta agcactgaca
601 cataaggaaa caggactgta cactgtggca taatggacct tggcagcaaa acaaagtgtg
661 tgcttcccca gaagattaaa tttttaaatg ttgcatgtct ctgttttttt aatttttttt
721 catttgttta ttttatgtat atgagtacac tgtccttgtc ttcagacgca ccagaagagg
781 gcatcagatc cctcttttga gccaccatgt ggttgctggg aattgaactc aggatctccg
841 gaagagcagt cggtgctctt aaccactgag ccatctctcc agccatctaa atgtcgcctg
901 tctgattgag tgaggagttg gtagcagtaa gtgccaggac actgagtccc ctgttagagt
961 gggagctgtg ctctgaccaa acaggaaaag agggttggga gggcatgcaa aggaaacctg
1021 gttccctggg cctctgtaaa agccgggaaa tgctacctat aataatctta tgtttctgcc
1081 tagaaaaggg ctaagcagct gcaccatggg agttacttta tacttcctcc tactgtttcc
1141 ctgtagggca ccttctgctt cactctacct tccagtgccc tcaccgttat tcaagctttt
1201 caaacagacc tgctgttggc ttcatagaac tgggagacac aatggagggc ttttgtctag
1261 aatgtttgag cttaaactga aagccatgga actaagcacc tttgggctgt cttgttgggc
1321 ctaagctgca gaggaggact gactgagaaa gctgccttgt ctataaagac ccagcttaac
1381 tctgaaacac tagttatgaa tggacaccta ttcctcatac tgcttgtgtg tatcaaagcc
1441 aggaaaggag agagtcattt ttctggggtt tttggaggta ggagggatgc ttttataaat
1501 gctgaagaag aggatgtgtg gcctaagtgg ctacggctct gaagcttgag gtgctgctgt
1561 atggtgatga gggtgtttgc agaggagctg tgagatctga gagggggggg gaggggggaa
1621 tgactagagg ttgtcagagt tctcaaagat ctgaacattg ggagctcagc tcggtgtcct
1681 cttgtgctct cttcctgcct gccctctgta aaggctctaa ggttgaaggc ctggccagtg
1741 cagcctgctg tggaatgcag ccacattgtg tcatgtttcc ttaggctttt aactgtagca
1801 gatgccttgt gtctagagct gaggaagcaa agcccaagat gcggcacccc cccaccccca
1861 cccccacaca cacatctaac atgtctcttc acaagaagac aatgtagcaa gagcccagag
1921 gcttccttct gacctgctct gactttaaac ctctgtactg tttcctgtgg gaagtactcg
1981 ccactttcca tgtggcatct cttgtatgca aactagattg tgcgctccta gagggcagag
2041 tccactctga tcacgttatt gttgtcttcc ttacccttct ggcgcctaat acagtgcctt
2101 gcacacagac acaataaatg gcagttgaat
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