LOCUS AK088679 3576 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days neonate thymus thymic cells cDNA, RIKEN
full-length enriched library, clone:E430023G15 product:POLY
[ADP-RIBOSE] POLYMERASE-1 (EC 2.4.2.30) (PARP-1) (ADPRT) (NAD(+)
ADP-RIBOSYLTRANSFERASE-1) (POLY[ADP-RIBOSE] SYNTHETASE-1) homolog
[Rattus norvegicus], full insert sequence.
ACCESSION AK088679
VERSION AK088679.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3576)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E430023G15
FEATURES Location/Qualifiers
source 1..3576
/cell_type="thymic cells"
/clone="E430023G15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E430023G15"
/db_xref="MGI:2427576"
/db_xref="taxon:10090"
/dev_stage="2 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="NOD"
/tissue_type="thymus"
CDS 64..3108
/codon_start=1
/note="POLY [ADP-RIBOSE] POLYMERASE-1 (EC 2.4.2.30)
(PARP-1) (ADPRT) (NAD(+) ADP-RIBOSYLTRANSFERASE-1)
(POLY[ADP-RIBOSE] SYNTHETASE-1) homolog [Rattus
norvegicus] (SWISSPROT|P27008, evidence: FASTY, 97%ID,
100%length, match=3039)"
/note="putative"
/protein_id="BAC40500.1"
/transl_table=1
/translation="MAEASERLYRVEYAKSGRASCKKCSESIPKDSLRMAIMVQSPMF
DGKVPHWYHFSCFWKVGHSIRQPDVEVDGFSELRWDDQQKVKKTAEAGGVAGKGQDGS
GGKAEKTLGDFLAEYAKSNRSMCKGCLEKIEKGQMRLSKKMVDPEKPQLGMIDRWYHP
TCFVKKRDELGFRPEYSASQLKGFSLLSAEDKEALKKQLPAIKNEGKRKGDEVDGTDE
VAKKKSKKGKDKDSSKLEKALKAQNELIWNIKDELKKACSTNDLKELLIFNQQQVPSG
ESAILDRVADGMAFGALLPCKECSGQLVFKSDAYYCTGDVTAWTKCMVKTQNPSRKEW
VTPKEFREISYLKKLKVKKQDRIFPPESSAPAPLALPLSVTSAPTAVNSSAPADKPLS
NMKILTLGKLSQNKDEAKAVIEKLGGKLTGSANKASLCISTKKEVEKMSKKMEEVKAA
NVRVVCEDFLQDVSASTKSLQELLSAHSLSSWGAEVKAEPGEVVAPKGKSAAPSKKSK
GAVKEEGVNKSEKRMKLTLKGGAAVDPDSGLEHSAHVLEKGGKVFSATLGLVDIVKGT
NSYYKLQLLEDDKESRYWIFRSWGRVGTVIGSNKLEQMPSKEDAVEHFMKLYEEKTGN
AWHSKNFTKYPKKFYPLEIDYGQDEEAVKKLTVKPGTKSKLPKPVQELVGMIFDVESM
KKALVEYEIDLQKMPLGKLSRRQIQAAYSILSEVQQAVSQGSSESQILDLSNRFYTLI
PHDFGMKKPPLLNNADSVQAKVEMLDNLLDIEVAYSLLRGGSDDSSKDPIDVNYEKLK
TDIKVVDRDSEEAEVIRKYVKNTHATTHNAYDLEVIDIFKIEREGESQRYKPFRQLHN
RRLLWHGSRTTNFAGILSQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCHTSQGD
PIGLILLGEVALGNMYELKHASHISKLPKGKHSVKGLGKTTPDPSASITLEGVEVPLG
TGIPSGVNDTCLLYNEYIVYDIAQVNLKYLLKLKFNFKTSLW"
regulatory 3556..3561
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3576
/note="putative"
BASE COUNT 960 a 880 c 1028 g 708 t
ORIGIN
1 aggacacgtt agcggagcgc accagcggcg gcgtcgggct gccgctgcag cacgagaagg
61 aggatggcgg aggcctcgga gaggctttat cgagtggagt acgcgaagag cgggcgcgcc
121 tcttgcaaga aatgcagcga gagtattccc aaggactccc tccgcatggc catcatggtg
181 cagtcaccca tgttcgatgg gaaagtccca cactggtacc acttctcctg cttctggaag
241 gtgggccact ccatccggca gcctgatgtt gaggtggatg gcttctctga gctgcgctgg
301 gatgatcagc agaaggtcaa gaagacggcc gaggctggag gcgtggcagg caaaggccag
361 gatggaagtg gcggcaaggc ggagaagaca ttgggtgact ttttagcgga gtacgccaag
421 tccaacagga gcatgtgcaa gggctgcctg gagaagatag agaagggcca gatgcgcctg
481 tccaagaaga tggtggatcc agagaagcca cagctgggta tgattgaccg ctggtaccat
541 ccaacttgct ttgtcaagaa gcgggacgag ctgggcttcc ggcctgagta cagtgccagt
601 cagctcaagg gctttagcct cctctctgca gaagacaaag aagctctgaa gaagcagctc
661 ccggccatca agaatgaagg aaagagaaaa ggtgacgagg tggatggaac agatgaagtg
721 gccaaaaaga aatctaagaa agggaaggac aaggatagta gtaagctgga gaaggccctc
781 aaggctcaga atgagctgat ctggaatatc aaagacgagc tgaagaaagc gtgttccacc
841 aacgacctga aggagctgct catcttcaac cagcagcagg tgccgtcagg agagtcagcg
901 atcttggaca gagttgctga cggcatggcg tttggggccc ttctgccctg caaggagtgt
961 tcaggccagc tggtctttaa gagcgacgct tattactgta ctggggatgt cactgcctgg
1021 accaagtgca tggtcaagac acagaatcct agccgaaagg aatgggtaac tccaaaggaa
1081 ttccgagaaa tatcctacct caagaagtta aaggtcaaaa aacaggaccg aatattccct
1141 ccagaaagca gcgccccagc accactggca ctgcccctct ctgtcacctc agcacccaca
1201 gctgtgaact cctctgctcc agcagacaag cccctgtcta acatgaagat cctgactctt
1261 gggaagctct cccagaacaa ggacgaagca aaagctgtga ttgagaaact cggaggcaag
1321 ttgacaggat ctgccaacaa ggcctccttg tgtatcagca ctaaaaagga ggtggagaag
1381 atgagtaaga agatggagga agtgaaagcg gccaacgttc gagttgtgtg tgaggacttc
1441 ctccaggacg tgtctgcctc cactaaaagc ctccaagagc tgctctcggc ccacagcttg
1501 tcctcgtggg gggctgaggt gaaggcagag cctggtgaag tggtggcccc caaggggaag
1561 tcagctgcac cctccaagaa gagcaagggt gctgtcaagg aggaaggtgt caacaaatct
1621 gaaaagagga tgaaattaac tctgaaggga ggagcagccg ttgatcctga ctctggtctg
1681 gaacactctg cacacgtcct ggagaaaggt gggaaggtgt tcagcgccac acttggcctg
1741 gtggacattg tgaaagggac gaactcctat tacaaactgc agcttctgga ggacgacaag
1801 gagagcaggt actggatctt ccggtcctgg ggccgggtgg gcacagttat cggcagtaac
1861 aaacttgagc agatgccctc caaagaggac gctgttgagc acttcatgaa gctgtatgaa
1921 gagaagactg ggaatgcctg gcactcgaaa aacttcacaa agtatcccaa gaagttctac
1981 cctctggaga ttgactatgg ccaggacgaa gaggcagtaa agaagctgac ggtgaagcct
2041 ggcaccaagt cgaagctgcc gaagccagtg caggagctcg tggggatgat cttcgacgtg
2101 gagagcatga aaaaggcctt ggtggagtac gagattgacc tccagaagat gcccttgggg
2161 aagctgagca gaaggcagat ccaggccgcc tactctatcc tcagcgaggt ccagcaggca
2221 gtgtctcaag gcagcagtga atcccagatc ctagatctct ccaatcgctt ctacactctg
2281 atcccccatg actttggaat gaagaagccc ccactcctga acaacgcaga cagcgtgcag
2341 gccaaggtgg agatgctaga caacctcctg gacatcgagg tggcctatag tcttctcagg
2401 ggtggctctg acgacagcag caaggatccc atcgacgtca actacgagaa actcaaaact
2461 gacattaagg tggttgacag agattctgaa gaggccgagg tcatcaggaa gtacgtgaag
2521 aacactcatg ctaccacgca caacgcctat gacctggaag tgatcgatat cttcaagata
2581 gagcgcgagg gggagagcca gcgctacaag cccttcaggc agcttcacaa ccggaggctg
2641 ctgtggcacg gctccaggac caccaacttt gctggcatcc tgtcgcaggg tctgcggata
2701 gccccacctg aagcgcctgt gacaggctac atgtttggga aagggatcta ctttgccgac
2761 atggtgtcca aaagtgcaaa ctactgccac acatctcagg gagacccgat tggcttaata
2821 ctgctgggag aggttgccct tggaaacatg tatgaactca agcatgcttc acatatcagc
2881 aagttaccca agggcaagca cagtgtcaaa ggtttgggaa aaaccacccc tgacccttcg
2941 gccagcatca ccctggaggg tgtagaggtt ccactgggaa cagggatccc atctggtgtc
3001 aacgacacct gcctgctgta taatgagtac attgtctacg acattgctca ggtgaatctc
3061 aaatacctgc tgaaactcaa gttcaatttt aagacatccc tgtggtaaag tgcgaggggt
3121 gggctgtgcc cagcacccag ggcctagggg gcaattctcc ctagtgcctc tgcaccagac
3181 accacaaaac ctcagccatg ctgccgccga agggtggccc cctcaccgaa tctccttagg
3241 aagggtttta tacagacagg ttaaagggct ctggtttcaa gtcccttgtc catgctgcac
3301 tggggcaggc cggttgtttg tggtttgtcc taccagccac agctccatag acagcagctg
3361 gcagtagagc aaaagttggg gagaggattt tgttgtttgc ctagactagt cctgagggaa
3421 gaaacaccac gtcacagtca cgatgtctgc cttactggct tccccaggga aggaaaaatg
3481 tgcttcctcc cttttttcaa gggttcatct ttgctttaat tttggcaaaa tgttaagcat
3541 ttattttgag ctaaaaataa aagttaattt catact
//