LOCUS AK086063 1780 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 15 days embryo head cDNA, RIKEN full-length enriched library, clone:D930001P21 product:Chemokine-like factor homolog [Mus musculus], full insert sequence. ACCESSION AK086063 VERSION AK086063.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1780) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=D930001P21 FEATURES Location/Qualifiers source 1..1780 /clone="D930001P21" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:D930001P21" /db_xref="MGI:2423383" /db_xref="taxon:10090" /dev_stage="15 days embryo" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="head" CDS 89..379 /codon_start=1 /note="Chemokine-like factor homolog [Mus musculus] (UniProt|Q9DAS1, evidence: FASTY, 100%ID, 51.9%length, match=237)" /note="putative" /protein_id="BAC39602.1" /transl_table=1 /translation="METPRPVVSRRPFCCTLKCFVKFLRLVVTVTSMIFFIVGQAPEP YIVITGFEVTVIFCFLVLYTCGLDKIMRSFFWPLLISFPCECRLVSCQLDPS" BASE COUNT 411 a 467 c 482 g 420 t ORIGIN 1 gcagttgagc tggtggcgcg agtcctggaa agagccatta atcgagaagg cttgaaagag 61 aggcgtgact gttgggtctg tgggcaagat ggagactcca cggccggtcg taagccgtcg 121 gcccttctgc tgtactctga aatgctttgt gaagttcctg cggttggtgg taactgtgac 181 atctatgatc tttttcatcg tgggacaagc ccctgaacca tatatcgtca tcactgggtt 241 tgaagtcacc gttattttct gtttcctagt cttatacacg tgtggacttg acaagataat 301 gagatctttc ttttggcctt tgcttatctc ctttccatgt gagtgccggc tagtttcatg 361 tcaacttgac ccaagctaga gaatggaaag gcatcctgag acacaggaat tcaggaacca 421 catacctcta caaggagcca cctcagcaga ggccgtccag ccccagggag gagatcccca 481 gctgagcgca ggaccctcag ccactctcct tctcttcatt acttttttcc ttcatggctc 541 ctccaaggag agtgtcacac caagaagaaa atctcatgaa agagatttat tgggaggccc 601 atggtgtata gctgtgaatc cagggatagc tgccggagcg ggcagcacag attgggacaa 661 aggggcagtg cttatatagg atttctgagg gggcagagct tctctggaca gattcaagtc 721 atgagcttgg ggtactcaag aattgatagg ttttcttgtt cagagattgg tagcattttt 781 cacccccttc cccctgcatc tggcccatgg gttagggtgg aaagtccttc ctggcctgag 841 ctggcttgcg ctgagatgac atctctgtgg aactgctggg gtcagagggt actagagaag 901 tggtgctgcc cccaaagacg gcttttgagg gacaactttg gctgaggcaa gagaggaaat 961 gggccaccat agacagctcc tgggttggcc ccacactgag gagatgtagt agtgcctcat 1021 tttaacccca ggcacatttg gacatctctt gtggggtgtt ttactgcagt ggtcgtagac 1081 tgggatgtgg aatggcctct gctttcatgg attttgcacc atgccctata gacactatac 1141 atacccccaa ataaccccag aacccctttt ctctgggttg gctggcagca gctcctgtgc 1201 atgtggttgc tgggtcttga gttttcaagc taggcatggc gccattttcc cacaacgagg 1261 acagcagatt gctaggctag gcagcagcca tcaaaaaaca ggtgcacgcg ggatagactg 1321 ccagcagccg ttgaagacag tttcccaggg ggccatcgcc cctgcggcca cccagccaac 1381 cggagggtgc agggccagcc tgacataatg aggcttggaa cccaccatga atcctgcatc 1441 cgccaggcgt gagtccagcg gggatgggtc caggcgtgag tccagacgct caactttacg 1501 acctcgagtg ttggatgctt cctcaccttc ggattcacag gcgtatgctg cctctgctcc 1561 acctcaccag ggaccttcag gtacccggga caccaaccag ccagggacct tcagtacccg 1621 ggacaccaac cagccagaga ccttcagtac ccgggacacc agccagccag ggaccttcag 1681 tacccggaac actaaccagt cagtgacctt gagtagggac catgccatct agtaagttca 1741 tgcagtcgct gcacagagat cacattgcca acaaattacc //