LOCUS AK083965 2882 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN
full-length enriched library, clone:D130070C10
product:unclassifiable, full insert sequence.
ACCESSION AK083965
VERSION AK083965.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2882)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D130070C10
FEATURES Location/Qualifiers
source 1..2882
/clone="D130070C10"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D130070C10"
/db_xref="MGI:2420094"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spinal ganglion"
misc_feature 1..2882
/note="putative"
/note="unclassifiable"
BASE COUNT 749 a 601 c 586 g 946 t
ORIGIN
1 ttttttttgt atacctgtat aatagttcat acatgattaa cacttaattc acagtaaaat
61 ccaggactac taaaatggaa agacttagta gaaaaaaatc ataaaaagtt agttctgttg
121 tatgagctta tgtttatgat atgccatggt tgggagctga agctccaagg ccagtttcct
181 gtctgtacat ttggccacct gtgttcaaca gtttaacagg gcaccaaatt aattctctgc
241 atataaatat catggaaact tttccttaat gagaattgta tgttttgtaa ccaaaggctc
301 cagaaatgac tagagtagtg ggcattgcct ctgggtttgt gttcaccaag ccaggcacag
361 gactcaagtt tgtcttttgg tgttgactat tcttttagta aaagtgtctt ttctgtttta
421 atgatgctct ccaaagttaa atcagaactt tacatttaaa ataccaagat agaaattata
481 aaaaccctct caaactctag aaaagcaggc agctgacatt ttttctgctg acatccattg
541 aagaataagt gaaagtaatg attttcagta ctgaaagaca gtcgtgtgta tgtgagtcag
601 aaaggaactt ccaggatatg taaatactgt atatacttgc gcacatgaca ctgctttaaa
661 ataatgttga ggtgtgttgt tttactttgg tttttgtatt tcattagtgc tgggaaatag
721 aacataaggg ctttcaaatg ctagtcagaa gctctgtcac tgagccacat cccagcccta
781 tgatctgcct gtgtgtacag ttgtgacatt gctcaccaca cttagaaggg aagactcatt
841 tgtgcggttt tccttaggaa aatagtgctg ggctgtggct cgtgtgaggc gctgctctgc
901 taggaagtga ccagctcgtt ttttagccac tccactcctt aacactgttc tttgacttgt
961 ttgggagatt cttaaataat ttttggttta agttgggttc agagggagat aatggactga
1021 aaggctgtgc agttagtcag tcccttgttt catagctcct gtaggtggtt ggagactgtc
1081 aaagttaaga cacttggaga ccaaagtctc tgtggctcat ttctgctggg gacactgaaa
1141 ggtgaagcca gacctgctgg tggcaggtgt attggaaagt gagagccttt ccttcctggg
1201 tggagacaaa ctcctttatt cctgagatag cgatgtctgt ggaaccaata aacaaatgtt
1261 agtctccctt ttccatcctt caccttggcg acagggctgc tccttagtcc atatataaag
1321 cattctgaaa ttttactagg actgaaacgt tcttattttt ctaaagtaat tgttccttga
1381 gttttcttta tgattttaaa aacaaaaaca tgcacactcg tggtacccag acatacttgc
1441 agatgaaaca cctatacata taaaaataaa ttaaaaatat gaaaatttaa aaattgtacc
1501 tcctgttcac cacctacctt caaaggtaat cctcaagtca ttaccagctg tatagttctt
1561 ctgttcatat tctcgttttt ttaaatcagg tttctatagt attaatgcct acagagacaa
1621 cagcataaaa tgtgttgatg ttggtgaggg aaaagtcggt ttaattgagc agctgctttc
1681 tttccagtgg atcttgtgtt ttctgaagta tttgagcact ctttgaaatg aatatcccaa
1741 gctctagatt gatgctctga cccctccagg gcttgtgttc gctgcctgcc cctttagttc
1801 tgtgtccagg gcttattcct cctcctcctc ctcctcctcc tccatcctcc tcctctcctt
1861 ctccttcttc tccttcttct tctccccgtg aagctgatga ctcctggaaa cagcagagct
1921 gcagtttttc tctcttgcct cagacccgag tgcagtgtgg ctattgctct ggttaaacat
1981 agcaaatcca aatagatatt ctctacctct tactcagacc tgctaaggct gttttttaca
2041 cttaaattct tttttattat ttttgttttt cacgtgtatg atatatatgc ttgagtgaat
2101 gtttttacat gtgtgggccc ttgtgtgtgg aaacacatac acatgtacat gtgggtgcat
2161 ctgtgtggag gcccaaggtt ggtgttggaa atcttcctca gttgttgttc cactttattc
2221 ttttgagaca gggtctctcg ctgaacctgg agctcagcac tcccagcaag tctctagcca
2281 gcttgctcca ggggcccctg cctccacctt caaaggctgg agttgcaggc tggccatcat
2341 atccacctgg cctttacatg gggttcaggc atctgaactc ccgtcctctt gcttgcatgt
2401 aagaacttca gctgccaagc cttctttccc acccctgcat ttcctgactc agggagaatc
2461 tacctaccca gtttaccaag ccggaaaacc aggagccagc ccgctgttca ttctagaggt
2521 agattttaag gacactaagt gattaacacc aggcattaac tcagtaagtt gtacccttcc
2581 ttgccaaact ggaaaataga gcctcacttt aattccttaa gtttagctgg aggtcttcaa
2641 aagaaaagtt gatcattttt agccatctgg tttattttct tctagaaaag tagattttag
2701 cattggagct agaaattctc tgaaattaca tgtaaacatt gagagtggtc cattctttcc
2761 tctctggaga gttgctgaat cctgacactg gacacccatg tgagcactgg agaggagagg
2821 cttttgtcag ttatgtgctc atagttttgg ttaaatttaa ctagtaagga atagattttt
2881 tg
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