LOCUS AK081920 3003 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
library, clone:C130087G11 product:similar to CDNA FLJ14329 FIS,
CLONE PLACE4000259, HIGHLY SIMILAR TO H.SAPIENS U5 SNRNP-SPECIFIC
200KD PROTEIN [Homo sapiens], full insert sequence.
ACCESSION AK081920
VERSION AK081920.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3003)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=C130087G11
FEATURES Location/Qualifiers
source 1..3003
/clone="C130087G11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:C130087G11"
/db_xref="MGI:2415030"
/db_xref="taxon:10090"
/dev_stage="16 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="head"
misc_feature 1..3003
/note="putative"
/note="similar to CDNA FLJ14329 FIS, CLONE PLACE4000259,
HIGHLY SIMILAR TO H.SAPIENS U5 SNRNP-SPECIFIC 200KD
PROTEIN [Homo sapiens] (SPTR|Q9H7S0, evidence: FASTY,
80.9%ID, 21.8%length, match=1459)"
BASE COUNT 777 a 679 c 822 g 725 t
ORIGIN
1 ggtcccttac gttcgtcctg cgttgtacct gttgtgccag ggcggttcgc tgaagcggtt
61 cggagcgtga agaagagtgg aaccctgagt tcccggagca tcagcagcca tggcggatgt
121 gactgcccgc agtttgcagt acgagtacaa ggcgaactca aatcttgtgc tccaagctga
181 ccgctctctc attgaccgga cccgccggga tgaaccgacg ggagaggttc tgtccctggt
241 tgggaagttg gagggaaccc gaatgggaga taaggctcaa cggaccaaac cacagatgca
301 ggaagaaaga cgggccaaga ggagaaaacg tgatgaggac cggcatgaca tgaacaagat
361 gaaaggctac acgctgctgt ctgagggcat tgatgagatg gtgggcatca tctacaagcc
421 taagacgaag gagacccgag agacctacga ggtgctgctc agcttcatcc aggctgcgct
481 gggagatcag cctcgagata ttctttgtgg agcagctgat gaagtcctgg ctgtgctgaa
541 gaatgaaaag cttcgagaca aggagagaag acgggagatt gacctgctgc tgggtcagac
601 agatgatacc agataccatg tgctggtaaa cctgggcaag aagatcacag actacggtgg
661 cgacaaggag atacagaata tggatgacaa cattgatgag acttatggtg tgaacgtgca
721 gtttgagtct gatgaggagg aaggtgatga agatgtgtat ggggaagtcc gagaagaagc
781 ttctgatgat gacatggaag gggacgaagc tgttgtgcgc tgcaccctct ctgctaatct
841 tgtagcctca ggcgaactga tgagttctaa gaagaaggat ttgcaccctc gggatatcga
901 tgccttctgg ctgcagcgac agctcagtcg tttctatgat gatgccattg tgtcacagaa
961 gaaggcagat gaggtgttgg agattttgaa gacagcaagt gatgaccgag aatgtgagaa
1021 ccaactggtt ttgctccttg gtttcaacac gtttgacttc attaaagtgt tgcggcagca
1081 caggatgatg attttatact gtaccttgtt ggccagtgct cagagtgaac ctgaaaagga
1141 gaggatcgtg ggaaagatgg aagctgatcc agagctctcc aagttcctct atcagctcca
1201 tgagactgag aaggaggacc tgatcagaga agaaaggtcc cggagagaga gagtccgtca
1261 gtcccgaatg gacacagatc tggaaaccat ggatttggac cagggtggag aggtgagtgc
1321 cgggctgtcc gcaggctgtt gtggctggaa agctcacctg ctaagcctgt ttgtgctttg
1381 cctgtttcca ggctctggct ccaaggcagg ttctggattt ggaggacctt gtttttaccc
1441 aaggaagcca cttcatggcc aataagcgct gccagcttcc tgacgggtcc ttccgacgcc
1501 agcgtaaagg ctatgaagag gtgcatgtgc ctgctttgaa gcccaagccc tttggctcag
1561 aagaacaatt gctcccggtg gagaagctgc caaagtatgc ccaggcagga tttgagggct
1621 tcaaaacgct gaaccggatc cagagtaagc tctaccgtgc tgccctggag actgatgaga
1681 acctgctgct gtgtgctccc actggtgcgg gcaagaccaa cgtggccctg atgtgtatgc
1741 tccgagagat agggaaacac atcaacatgg acggcacaat caatgtggat gacttcaaga
1801 tcatctacat agctcccatg cggtccctgg tccaggagat ggtgggcagt tttggaaagc
1861 gcctggccac atatggcatc actgttgctg agctgactgg ggatcaccag ctatgcaagg
1921 aggaaatcag tgccacacag attatcgtct gcacccctga gaagtgggac atcatcacac
1981 gcaagggcgg ggagcgcacc tacacccagc tggtgcgact cattgtcttg gatgagatcc
2041 atcttctaca tgatgacaga ggtcctgtct tagaagcttt ggtggccagg gccatccgaa
2101 acattgagat gacccaagaa gatgtccgac tcattggtct cagtgctacc ctccccaact
2161 atgaagatgt ggccaccttt ctgcgagtcg accctgctaa gggcctcttc tactttgata
2221 acaggtataa aaagaaactg gaaacttgtt acccaggcag tcttcctgtt ccctactctt
2281 ctctaaggag catactattg agttttaggg ttcctgtgtg tattttagaa agcattgttt
2341 ctaggtcaat ggaaagtaac ttctctcaca gtgttctctg ccagaaatct catttgtata
2401 actgttgaac ttctagcttc cgccccgtgc ctctggaaca aacatatgtg ggcatcacag
2461 agaaaaaagc tatcaaacgt ttccagatca tgaatgaaat agtctatgag aaaatcatgg
2521 aacatgctgg aaaaaatcag gtttgtggat ggttcttgaa ccttttcctt tttttttttt
2581 ggtttttcga gacagggttt ctctgtgtag ccctggctgt cctggaactc actctctcac
2641 tctgtagacc aggctggcct tgaactcaga aatccacctg cctctgcctc tcaagtgctg
2701 ggattaaagg tgtgctccac cacgcccagc tccttttcca tttttaactt aaactaatag
2761 acaaggtaat agcatgactc accagtgatc agaaataata tgagttacta tattactaca
2821 gctgctttaa aagatggtca gggtctggag agatggctca gtggttaaga gcactgactg
2881 ctcttccaaa ggtcctgagt tcaaatccca gcaaaccaca tggtggctca taaccatcca
2941 taatgagatc tgatgccctc ttgtggtgtg tctgaagaca gctacagtgt acttacatat
3001 agt
//