LOCUS AK078485 642 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo female mullerian duct includes
surrounding region cDNA, RIKEN full-length enriched library,
clone:6820412G23 product:DJ671D7.1 (SIMILAR TO D.MELANOGASTER
CG5986 PROTEIN) (FRAGMENT) homolog [Homo sapiens], full insert
sequence.
ACCESSION AK078485
VERSION AK078485.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 642)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=6820412G23
FEATURES Location/Qualifiers
source 1..642
/clone="6820412G23"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:6820412G23"
/db_xref="MGI:2396708"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="mullerian duct includes surrounding region"
CDS 29..>642
/codon_start=1
/note="DJ671D7.1 (SIMILAR TO D.MELANOGASTER CG5986
PROTEIN) (FRAGMENT) homolog [Homo sapiens] (SPTR|Q9HD08,
evidence: FASTY, 91.2%ID, 100%length, match=441)"
/note="putative"
/protein_id="BAC37302.2"
/transl_table=1
/translation="MAEAAVVAWVRGPGTVWKALPCASVGCSVRDVIYRHCQEQEVPV
ECFFVTCNGVLVNAGDKVQHGAVYSLEPRLRGGKGGFGSMLRALGAQIEKTTNREACR
DLSGRRLRDVNHEKAMAEWVKQQAEREAEKEQRRLERLQRKLAEPAHCFTSPDYQRQC
HEMAERLEDSVLKGMQAASSKMVSAEITETRKRPNKSKTDQETSA"
BASE COUNT 160 a 146 c 216 g 120 t
ORIGIN
1 gagtccagag gttccgtcac cagacgaaat ggcggaggct gcggtggtgg cgtgggttcg
61 cggccccggt accgtgtgga aggcgctgcc gtgtgcctcg gttgggtgct ccgtgcgcga
121 tgtgatctac cgacactgcc aggaacagga agttcccgtg gaatgcttct ttgtgacgtg
181 caatggagtc ctcgttaatg ccggtgataa ggtgcagcat ggagccgtgt acagtttgga
241 gcccaggctt cgtgggggga aaggaggttt tgggtctatg cttcgagcac ttggtgcaca
301 gatagagaag acaaccaata gagaagcctg ccgggatctc agtgggagga gattacgaga
361 tgtcaatcat gagaaagcga tggctgagtg ggtaaaacag caagctgagc gagaggctga
421 aaaggagcaa aggcgcctgg agaggctgca gcgaaagctt gccgagcctg cacactgctt
481 caccagtccc gactaccaga ggcagtgcca tgagatggct gagcgtctgg aggactcagt
541 cctcaaaggt atgcaggctg catccagcaa gatggtatca gcagaaatca ctgagactcg
601 gaaacggcct aacaagtcaa aaacggacca ggaaactagt gc
//