LOCUS AK077824 2088 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 13 days embryo forelimb cDNA, RIKEN full-length
enriched library, clone:5930403C24 product:weakly similar to
UNKNOWN (PROTEIN FOR IMAGE:2961368) (FRAGMENT) [Homo sapiens],
full insert sequence.
ACCESSION AK077824
VERSION AK077824.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2088)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5930403C24
FEATURES Location/Qualifiers
source 1..2088
/clone="5930403C24"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5930403C24"
/db_xref="MGI:2394256"
/db_xref="taxon:10090"
/dev_stage="13 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="forelimb"
misc_feature 1..2088
/note="putative"
/note="weakly similar to UNKNOWN (PROTEIN FOR
IMAGE:2961368) (FRAGMENT) [Homo sapiens] (SPTR|Q96IK1,
evidence: FASTY, 51%ID, 96.9%length, match=607)"
BASE COUNT 692 a 486 c 526 g 384 t
ORIGIN
1 gagttccttt tcacttccgg ggttgctcta gatccgctgg ttccgtaaca acatcccgtt
61 ggcttccctc aggcggcggg acctgtgtag ccgccttcct cggagcgcct gcccgcctgg
121 gctcgcgggc tccccggtcc gggacgccat ggccaccaac ccgcagccgc agccaccgcc
181 gcccgcgcct ccgtcgccgc caccgcaacc acagccgccg cctccgccgc ctggccctgg
241 ggctggcccg ggagcgagcg ggccgggaag cgcgggggct ggtgctgggg acccgcagct
301 cgttgccatg atcgtaaacc acctcaagag ccaggggctc ttcgaccagt tccgcaggga
361 ctgcctggcc gatgtggaca ccaagcctgc ctatcagaat ctcaggcaga gagttgacaa
421 cttcgttgca aaccacttgg caactcatac atggagtccc cacctcaaca agaaccaact
481 gagaaacatt ctccgacagc aagttctgaa atcaggaatg ctggagtctg gtcttgaccg
541 aattatttct caggttgtgg atccaaagat caaccacaca ttcaggcctc aggtagaaaa
601 agctgtgcac gagttcctgg ccacattgaa tcacaaagag gaagctgctg gcagcacagc
661 tcctgatgat gagaagccag aatcttctgt ctttacccaa ggtgatcctg ctcctgggcc
721 cagtgctaat gtagccagtg atgccatgtc aatcttggaa accataactt ctcttaacca
781 agaagctaac gctgaccgag cttaaacaga aatgtcaaat gccaaggtca gtgagagaac
841 atccatataa ctctgatctc acccaagcac tgacgttagc acagacgtgg atagaggctc
901 agaagatgcg actgagagag aaaaggctac ctctgattct ggaggagatg ggctagaagc
961 tgctctcaag tcagaagaac tcagtgatct cccttgtcca gtggaagaaa ctaaaaatca
1021 tatgaaagag aataatagct tactgttact aagtaaggat gctcagcagg aaagcactga
1081 cccaaaaatt aaatcaatgg acaaaggaga aaagaaaccc gatggtaatg agaaaggaga
1141 gagaaagaaa gagaagaagg aaaagactga aaaaaaaatt gatcactcta aaaggaatga
1201 agatacacag aaagtgaaag atgagagaca agcaaaggac aaagaagtgg agagcacaaa
1261 gcttccttct gaaaagagca acagcagagc cagggctgct gaggggacaa aagaagattg
1321 ttctttgtta gattctgatg tggatggtct cactgatatc acagtcagct ctgtccacac
1381 cagtgacctt tcgtcctttg aagaagacac agaggaggaa gttgtcgtgt ctgagagcat
1441 ggaagaagga gagattacat cagaggatga agagaaaaac aagcagaata aagcaaaagt
1501 tcaacctggt gattctagtg atggaaaagc cagaggcgta cggcatgctt atgttcacaa
1561 accgtatctt tactcaaagt actacagtga ttctgatgac gaactcacag tggagcaacg
1621 gcggcaatcc attgctaaag aaaaagaaga gagactttta agaagacgaa tcaatagaga
1681 gaaacttgaa gaaaaacgaa agcagaaagc agaaaagaca aaatcttcta aagtgaagag
1741 ccaaggcaaa agtactgtgg acctagaaga ctcatcagcc aagactttgg aacccaaagc
1801 cccaagaatt aaagaagtcc ttaaagaacg gaaagttcta gagaagaaag tagccttaag
1861 caaaagaaga agaaaagatt caaggaatgt tgatgaaaat tccaaaaaga aacctcaggc
1921 tgaggaagag tccaaagaag ccctcaaaac aactgagtac tgtgaaaaag aaaaggcctc
1981 ttccaaggac ctcaggcaca ctcatggaaa aggtgaacca agtagacctg ccaggaggct
2041 gtcagagtct ctgcattcag cagatgaaaa caagactgaa tcaaaagg
//