LOCUS AK077576 1450 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 8 days embryo whole body cDNA, RIKEN full-length
enriched library, clone:5730454K04 product:presenilin 2, full
insert sequence.
ACCESSION AK077576
VERSION AK077576.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1450)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=5730454K04
FEATURES Location/Qualifiers
source 1..1450
/clone="5730454K04"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:5730454K04"
/db_xref="MGI:2393755"
/db_xref="taxon:10090"
/dev_stage="8 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="whole body"
misc_feature 1..1450
/note="presenilin 2 (MGD|MGI:109284 GB|NM_011183,
evidence: BLASTN, 99%, match=842)"
/note="putative"
BASE COUNT 305 a 394 c 359 g 392 t
ORIGIN
1 agcctttgtc tctccctgcc actcttcatg ctatatgatg acggtggcga tgacggcggc
61 cctttgttcc tggacactta gaagaagact cctacgacag ttttggagaa ccctcatacc
121 ctgaagcctt cgaagccccc ctgcctggct acccagggga ggagctggag gaggaggagg
181 aaagtaaggt gcccgcgttc agatggcctg cttcacaagt ttatttaaaa atacctttag
241 tcagatgcta tgccaaactg caccgcagcc tgcagtccca gtggtctctc ctaaccaagt
301 gactccctga ggtaccaggc ttctgcctag gctgccagtc actcagtccg tggtcccatc
361 cccacacccc gatgccccca gactttttct aggaagtcca tcttgtcgct agtctgcaat
421 actgcatact gcagctgagg gaatctctca tcacgacact cttgctgggt cgcttggctc
481 aagtcctggc ccctcacttc cttttttttt ttcttttttt tttttttttt tctttctttt
541 gcctgcttcc tgccgaggtt tcctatcagt tggattggac agggaccact ttctcttctc
601 cacacagggg gcgtgaagct cggcctggga gacttcatct tctacagcgt cctggtgggc
661 aaggctgcag ccactggcaa cggagactgg aacactacgc tggcctgttt tatcgccatc
721 ctcattggct tgtgtctcac cctcctgctg cttgctgtgt tcaagaaggc tctgcccgcc
781 ctccccatct ccatcacctt tggactcatc ttctacttct ccacagacaa cctggtgcgc
841 cctttcatgg acactctggc ctcccaccag ctctacatct gacaggagcc aggcggaggc
901 tccgagagct atgggggcgt cactggatgc aggtgtatag ttttacactc tagtgccata
961 tattttttaa agaaattttc tttccttaca aaagaagaag aagaaaaaaa aaaaaagaat
1021 aaaaacgtgt cgtgtttact tcgtgatgag gaagcagaag ccacccttcg gtgctacctg
1081 tcttgtcacc agactgcagc ttgcctgtcg gagcatctgt ggcgccggtg ggatgcttgg
1141 atgctcagca agcaagcgtc tcttcaggga tgaggtcgtg tgtggagcag gttggggagg
1201 atgcaggccc ctgtccacgt ctgtaagtct ccagggatga tcagaaggaa caggtgcatt
1261 gtgggaacca ggaggcgcca tcaccctgac cagaggtgga aagcccgtgt gcagtcatga
1321 atgtccccag tgctgtgttt gtgatgtctg ttactttaga accttagaag ccaagtcctg
1381 ttcttatttc tgcagtgact gctgggaagt ggcttaataa tgataccaat aaacagatgc
1441 tcctgctggt
//