LOCUS AK075743 1972 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult female placenta cDNA, RIKEN full-length
enriched library, clone:1600024A01 product:hypothetical Trp-Asp
(WD) repeats circular profile containing protein, full insert
sequence.
ACCESSION AK075743
VERSION AK075743.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1972)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1600024A01
FEATURES Location/Qualifiers
source 1..1972
/clone="1600024A01"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1600024A01"
/db_xref="MGI:1910149"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="placenta"
CDS 315..1859
/codon_start=1
/note="hypothetical Trp-Asp (WD) repeats circular profile
containing protein (PROSITE|PS50294, evidence: InterPro)"
/note="putative"
/protein_id="BAC35923.1"
/transl_table=1
/translation="MQESGCRLEHPSATKFRNHVMEGDWDKAENDLNELKPLVHSPHA
IVVRGALEISQTLLGIIVRMKFLLLQQKYLEYLEDGKVLEALQVLRCELTPLKYNTER
IHVLSGYLMCSHAEDLRAKAEWEGKGTASRSKLLDKLQTYLPPSVMLPPRRLQTLLRQ
AVELQRDRCLYHNTKLDNNLDSVSLLIDHVCSRRQFPCYTQQILTEHCNEVWFCKFSN
DGTKLATGSKDTTVIIWQVDPDTHLLKLLKTLEGHAYGVSYIAWSPDDSYLVACGPDD
CSELWLWNVQTGELRTKMSQSHEDSLTSVAWNPDGKRFVTGGQRGQFYQCDLDGNLLD
SWEGVRVQCLWCLSDGKTVLASDTHQRVRGYNFEDLTDRNIVQEDHPIMSFTISKNGR
LALLNVATQGVHLWDLQDRVLVRKYQGVTQGFYTIHSCFGGHNEDFIASGSEDHKVYI
WHKRSELPIAELTGHTRTVNCVSWNPQIPSMMASASDDGTVRIWGPAPFIDHQNIEEE
CSSMDS"
BASE COUNT 527 a 460 c 518 g 467 t
ORIGIN
1 tcgcctgcct gtcggcgcag aacggggagt cgtccccttc ggcgacgtcc gcgggggacc
61 tggcccacgc caacgggctc ctgcctgccg ccccctccgc cgctggcaac aatagcaaca
121 gcctgagtgt caataacggg gttcccggcg gggccgccgc ggcctccgcc accgccgccg
181 ccgcccaggc cacccccgag ctgggcagca gcctcaagaa gaagaagcgg ctctcgcagt
241 ccgatgagga tgtcattagg ctcataggac agcacctcaa tggcctaggg ctcaaccaga
301 ctgttgatct cctcatgcaa gagtcaggat gtcgtttaga gcatccttct gctaccaaat
361 tccgaaatca tgtcatggaa ggagactggg ataaggcaga gaatgacctg aatgagctaa
421 agcctttagt gcattctcct cacgctattg tggtaagagg cgcacttgaa atctctcaaa
481 cgttgttggg aataattgtg aggatgaagt ttctgctgct gcagcagaag tacctggaat
541 acctggagga cggcaaggtc ctggaggcac ttcaagttct acgctgcgaa ctgacgccgt
601 tgaaatacaa caccgagcgc atccatgtcc ttagtgggta tctgatgtgc agccatgccg
661 aagacctacg ggcaaaagct gaatgggaag gcaagggcac agcgtcccgg tccaaactgc
721 tggacaagct tcagacctat ttaccaccat cagtgatgct tcccccacgg cgtttacaga
781 ctctcctgcg gcaggcggtg gaactacaaa gggatcggtg cctatatcac aataccaaac
841 ttgacaataa tctagattct gtgtctctac ttatagatca tgtttgtagt aggaggcagt
901 ttccctgtta cactcaacag atacttacag agcattgtaa tgaagtgtgg ttctgtaaat
961 tttctaatga tggcactaaa ctagcaacag gatcaaagga taccacagtt atcatatggc
1021 aagttgatcc ggatacgcac ctgttaaaac tgcttaaaac gttagaagga catgcgtatg
1081 gtgtctctta tatagcatgg agtccagatg acagctatct tgttgcttgt ggtccagatg
1141 actgctctga gctttggctt tggaatgtac agacgggaga attaagaaca aaaatgagcc
1201 aatctcatga agacagtttg accagtgtgg cctggaatcc agatgggaaa cgctttgtga
1261 cgggaggtca gcgtggtcag ttctaccagt gtgacctgga cggaaatctt ctggactcct
1321 gggaaggagt gcgagtacag tgcctgtggt gcttgagtga cgggaagact gtgctggctt
1381 ccgacacgca ccagagagtc cggggctaca actttgagga cctgacagat agaaacatag
1441 tacaggaaga tcatcctatt atgtcattta ctatttccaa aaatggccga ttagctttgt
1501 taaatgtagc aactcaggga gttcatttat gggacttgca agacagagtt ttagtaagga
1561 aatatcaagg tgttacccaa gggttttata caatccactc gtgttttgga ggccataatg
1621 aagacttcat tgctagtggc agcgaagatc acaaggttta catctggcac aaacgtagtg
1681 aactgccaat tgcggagctc acagggcaca cgcgcacagt aaattgtgtt agctggaacc
1741 cacagattcc atccatgatg gccagtgcct cagacgatgg cactgttaga atatggggac
1801 cagcaccttt catagaccac cagaatattg aagaggaatg cagtagcatg gatagttgat
1861 ggcaaatttg gagcagacga cttctgttta acttaaaatt agtcgtattt taatggcttg
1921 ggatttggtg caaacaaaca tgattgatag ctggacagac atgctcgtca tg
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