LOCUS AK075691 1527 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 18-day embryo whole body cDNA, RIKEN full-length
enriched library, clone:1190008I21 product:unclassifiable, full
insert sequence.
ACCESSION AK075691
VERSION AK075691.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1527)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-APR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=1190008I21
FEATURES Location/Qualifiers
source 1..1527
/clone="1190008I21"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:1190008I21"
/db_xref="MGI:2389770"
/db_xref="taxon:10090"
/dev_stage="18-day embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="whole body"
misc_feature 1..1527
/note="putative"
/note="unclassifiable"
BASE COUNT 441 a 301 c 377 g 408 t
ORIGIN
1 agggaggact acgctgctca cggaggtcgg gaggacctgg aagcgcgcga gtttccagtc
61 tggttccttg tcaagattac ccagcccctg cctaagaggc taggccccct ttgaaggcgt
121 tcaactttat tggttcccaa ctgagcaaac agacacggac tccattcttc gcggctgcgc
181 agactctcac aagcaagtag taaacttgat gccaagcctg gcatagcagg ggaaaaaaac
241 cttaaaaata ttcgagaagc gaaggcaagg aagattggtg aagagttcaa aggcagcaca
301 gccaagtagt aagatgctgt ctcaaaacaa aaaaagtttg ggtttgtcac gttccagtct
361 gggaaccagg accgcagcgt gttcgcggtt tctgtttgtt ctgtgtcgca cgctgtaccc
421 aaggatagtg tggaactcag tctgcagcct aagacgtttt ccccttaaaa acgtcttttc
481 aggaaaaagc aagattcatg gttttgtaga aaacaacttc atgacaaacc aatatgaagc
541 agaattggga tttattaaaa gataatttta gcactcttga gcacagtggc taataggtgc
601 tcagggggaa aaaacaaaac aaaacaaaaa aacaagataa agcccaaggg tgagtatggg
661 tttcttggcc ttttcaaggg agaattttgc ataggagtat tttgcaactg ttatgtgtag
721 gcgcctctcc gttgttattg gtgtttgttt ttaaggaaaa ttattcagag taatttacaa
781 ggtttaagtg gttgttcagg aagtttgatt tgtgggggtg cagctagcgc acaccttaag
841 tcccagcgca cagaaggcag aggcagatgg atctctgagt tcaaggccag catatcgtct
901 acagagttct aggagattta tttgggagaa gtgctgagga tacagaaagg gctgtcagtt
961 actattcggt gataaaacac atggccaagg caactataaa agattatttg gcgctcacgg
1021 ttccagaggg atagccatcg ttatggcggt tcggaggtag cgagcagcta gggcagcagc
1081 tgggagcata tttctctaag cacaaacaga aagtcttgag ctaacttaag ctgataggag
1141 tcttttgaaa cctcaaagcc tgtcctcagt gacataattt ctccagcaag gccacacttg
1201 ctcctccgca aatagccatc aactggaaac aagtgttcaa gtgcccagga ctgtgagggg
1261 catctagtca aacaaccaca gtaaccattc ctggcagttc ttagttttca gttctggata
1321 tcaaacccaa aaacctcata tatgataggc aatcactcca actgggctat atctagtgag
1381 ctatattcct agctttgact ttgattctaa tattccattg tatgtgtata tattttaaac
1441 aattcatatc ttggtgggtg tctggtttgg ttctgtaact tgtccgttgt gggagtagtg
1501 ttgtgataaa atatgcatat tgtaggg
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