LOCUS AK075405 2959 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA PSEC0096 fis, clone NT2RP2002060, highly similar
to Claudin-2.
ACCESSION AK075405
VERSION AK075405.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2959)
AUTHORS Isogai,T. and Yamamoto,J.
TITLE Direct Submission
JOURNAL Submitted (20-MAR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Nishikawa,T., Suzuki,Y., Kawai-Hio,Y., Hayashi,K.,
Ishii,S., Saito,K., Yamamoto,J., Wakamatsu,A., Nagai,T.,
Nakamura,Y., Nagahari,K., Sugano,S. and Isogai,T.
TITLE HRI human cDNA sequencing project
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS Otsuki,T., Ota,T., Nishikawa,T., Hayashi,K., Suzuki,Y.,
Yamamoto,J., Wakamatsu,A., Kimura,K., Sakamoto,K., Hatano,N.,
Kawai,Y., Ishii,S., Saito,K., Kojima,S., Sugiyama,T., Ono,T.,
Okano,K., Yoshikawa,Y., Aotsuka,S., Sasaki,N., Hattori,A.,
Okumura,K., Nagai,K., Sugano,S. and Isogai,T.
TITLE Signal Sequence and Keyword Trap in silico for Selection of
Full-Length Human cDNAs Encoding Secretion or Membrane Proteins
from Oligo-Capped cDNA Libraries
JOURNAL DNA Res. 12, 117-126 (2005)
COMMENT HRI human cDNA sequencing project; cDNA 5'- & 3'-end one pass
sequencing, clone selection and full insert sequencing: Helix
Research Institute (supported by Japan Key Technology Center
etc.); cDNA library construction: Institute of Medical Science,
University of Tokyo, Laboratory of Genome Structure, Human Genome
Center.
FEATURES Location/Qualifiers
source 1..2959
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP2002060"
/clone_lib="NT2RP2"
/db_xref="H-InvDB:HIT000082440"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
2-weeks retinoic acid (RA) induction"
/organism="Homo sapiens"
CDS 327..1019
/codon_start=1
/note="highly similar to Claudin-2"
/protein_id="BAG52130.1"
/translation="MASLGLQLVGYILGLLGLLGTLVAMLLPSWKTSSYVGASIVTAV
GFSKGLWMECATHSTGITQCDIYSTLLGLPADIQAAQAMMVTSSAISSLACIISVVGM
RCTVFCQESRAKDRVAVAGGVFFILGGLLGFIPVAWNLHGILRDFYSPLVPDSMKFEI
GEALYLGIISSLFSLIAGIILCFSCSSQRNRSNYYDAYQAQPLATRSSPRPGQPPKVK
SEFNSYSLTGYV"
BASE COUNT 691 a 822 c 728 g 718 t
ORIGIN
1 agatggattt tgcaaagctg tggttaacga ttagaaatcc tttatcacct cagcccgtgg
61 ccccttgtac ttcgctcccc tccctcagga tccctttctc cctctccagg ggcatctccc
121 cctccaaggc tctgcaaaga actgccctgt cttctagatg ccttcttgag gctgcttgtg
181 gccacccaca gacacttgta aggaggagag aagtcagcct ggcagagaga ctctgaaatg
241 agggattaga ggtgttcaag gagcaagagc ttcagcctga agacaaggga gcagtccctg
301 aagacgcttc tactgagagg tctgccatgg cctctcttgg cctccaactt gtgggctaca
361 tcctaggcct tctggggctt ttgggcacac tggttgccat gctgctcccc agctggaaaa
421 caagttctta tgtcggtgcc agcattgtga cagcagttgg cttctccaag ggcctctgga
481 tggaatgtgc cacacacagc acaggcatca cccagtgtga catctatagc acccttctgg
541 gcctgcccgc tgacatccag gctgcccagg ccatgatggt gacatccagt gcaatctcct
601 ccctggcctg cattatctct gtggtgggca tgagatgcac agtcttctgc caggaatccc
661 gagccaaaga cagagtggcg gtagcaggtg gagtcttttt catccttgga ggcctcctgg
721 gattcattcc tgttgcctgg aatcttcatg ggatcctacg ggacttctac tcaccactgg
781 tgcctgacag catgaaattt gagattggag aggctcttta cttgggcatt atttcttccc
841 tgttctccct gatagctgga atcatcctct gcttttcctg ctcatcccag agaaatcgct
901 ccaactacta cgatgcctac caagcccaac ctcttgccac aaggagctct ccaaggcctg
961 gtcaacctcc caaagtcaag agtgagttca attcctacag cctgacaggg tatgtgtgaa
1021 gaaccagggg ccagagctgg ggggtggctg ggtctgtgaa aaacagtgga cagcaccccg
1081 agggccacag gtgagggaca ctaccactgg atcgtgtcag aaggtgctgc tgaggataga
1141 ctgactttgg ccattggatt gagcaaaggc agaaatgggg gctagtgtaa cagcatgcag
1201 gttgaattgc caaggatgct cgccatgcca gcctttctgt tttcctcacc ttgctgctcc
1261 cctgccctaa gtccccaacc ctcaacttga aaccccattc ccttaagcca ggactcagag
1321 gatccctttg ccctctggtt tacctgggac tccatcccca aacccactaa tcacatccca
1381 ctgactgacc ctctgtgatc aaagaccctc tctctggctg aggttggctc ttagctcatt
1441 gctggggatg ggaaggagaa gcagtggctt ttgtgggcat tgctctaacc tacttctcaa
1501 gcttccctcc aaagaaactg attggccctg gaacctccat cccactcttg ttatgactcc
1561 acagtgtcca gactaatttg tgcatgaact gaaataaaac catcctacgg tatccaggga
1621 acagaaagca ggatgcagga tgggaggaca ggaaggcagc ctgggacatt taaaaaaata
1681 aaaatgaaaa aaaaacccag aacccatttc tcagggcact ttccagaatt ctctcatatt
1741 tgtgggctgg gatcaagcct gcagcttgag gaaagcacaa ggaaaggaaa gaagatctgg
1801 tggaaagctc aggtggcagc ggactctgac tccactgagg aactgcctca gaagctgcga
1861 tcacaacttt ggctgaagcc cctgcctcac tctagggcac ctgacctggc ctcttgccta
1921 aaccacaagg ctaagggcta tagacaatgg tttccttagg aacagtaaac cagtttttct
1981 agggatggcc cttggctggg ggatgacagt gtgggagctg tggggtactg aggaagacac
2041 cattccttga cggtgtctaa gaagccaggt ggatgtgtgt ggtggctcca gtgggtgttt
2101 ctactctgcc agtgagaggc agccccctag aaactcttca ggcgtaatgg aaaatcagct
2161 caaatgagat caggcccccc cagggtccac ccacagagca ctacagagcc tctgaaagac
2221 catagcacca agcgagcccc ttcagattcc cccactgtcc atcggaagat gctccagagt
2281 ggctagaggg catctaaggg ctccagcatg gcatatccat gcccacggtg ctgtgtccat
2341 gatctgagtg atagctgcac tgctgcctgg gattgcagct gaggtgggag tggagaatgg
2401 ttcccaggaa gacagttcca cctctaaggt ccgaaaatgt tccctttacc ctggagtggg
2461 agtgaggggt catacaccaa aggtattttc cctcaccagt ctaggcatga ctggcttctg
2521 aaaaattcca gcacacctcc tcgaacctca ttgtcagcag agagggccca tctgttgtct
2581 gtaacatgcc tttcacatgt ccaccttctt gccatgttcc agctgctctc ccaacctgga
2641 aggccgtctc cccttagcca agtcctcctc aggcttggag aacttcctca gcgtcacctc
2701 cttcattgag ccttctctga tcactccatc cctctcctac ccctccctcc cccaaccctc
2761 aatgtataaa ttgcttcttg atgcttagca ttcacaattt ttgattgatc gttatttgtg
2821 tgtgtgtgtc cgatctcaca agtatattgt aaacccttcg gtgggtgggg gccatatcct
2881 agacctctct gtatccccca gactatctgt aacagtgcca ggcacacagt aggtgatcaa
2941 taaacacttg ttgattgag
//