LOCUS AK075233 3899 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ90752 fis, clone PLACE3000181, highly similar
to Homo sapiens protocadherin 1 (cadherin-like 1) (PCDH1),
transcript variant 2, mRNA.
ACCESSION AK075233
VERSION AK075233.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3899)
AUTHORS Isogai,T. and Otsuki,T.
TITLE Direct Submission
JOURNAL Submitted (25-MAR-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Isogai,T., Ota,T., Nishikawa,T., Hayashi,K., Otsuki,T.,
Sugiyama,T., Suzuki,Y., Nagai,K., Sugano,S., Ishii,S.,
Kawai-Hio,Y., Saito,K., Yamamoto,J., Wakamatsu,A., Nakamura,Y.,
Kojima,S., Nagahari,K., Masuho,Y., Ono,T., Okano,K., Yoshikawa,Y.,
Aotsuka,S., Sasaki,N., Hattori,A., Okumura,K., Iwayanagi,T. and
Ninomiya,K.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2002)
REFERENCE 3
AUTHORS Otsuki,T., Ota,T., Nishikawa,T., Hayashi,K., Suzuki,Y.,
Yamamoto,J., Wakamatsu,A., Kimura,K., Sakamoto,K., Hatano,N.,
Kawai,Y., Ishii,S., Saito,K., Kojima,S., Sugiyama,T., Ono,T.,
Okano,K., Yoshikawa,Y., Aotsuka,S., Sasaki,N., Hattori,A.,
Okumura,K., Nagai,K., Sugano,S. and Isogai,T.
TITLE Signal Sequence and Keyword Trap in silico for Selection of
Full-Length Human cDNAs Encoding Secretion or Membrane Proteins
from Oligo-Capped cDNA Libraries
JOURNAL DNA Res. 12, 117-126 (2005)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology; cDNA library construction:
Institute of Medical Science, University of Tokyo, Laboratory of
Genome Structure, Human Genome Center; cDNA 5'- & 3'-end one pass
sequencing and clone selection: Helix Research Institute
(supported by Japan Key Technology Center etc.).
FEATURES Location/Qualifiers
source 1..3899
/clone="PLACE3000181"
/clone_lib="PLACE3"
/db_xref="H-InvDB:HIT000082268"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="placenta"
CDS 220..3231
/codon_start=1
/note="highly similar to Homo sapiens protocadherin 1
(cadherin-like 1) (PCDH1), transcript variant 2, mRNA"
/protein_id="BAG52090.1"
/translation="MGNLDRERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNAP
KFERPSYEAELSENSPIGHSVIQVKANDSDQGANAEIEYTFHQAPEVVRRLLRLDRNT
GLITVQGPVDREDLSTLRFSVLAKDRGTNPKSARAQVVVTVKDMNDNAPTIEIRGIGL
VTHQDGMANISEDVAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASETGSDS
KKKYFLQTTTPLDYEKVKNYTIEIVAVDSGNPPLSSTNSLKVQVVDVNDNAPVFTQSV
TEVAFPENNKPGEVIAEITASDADSGSNAELVYSLEPEPAAKGLFTISPETGEIQVKT
SLDREQRESYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLSGYNFSVIENMP
ALSPVGMVTVIDGDKGENAQVQLSVEQDNGDFVIQNGTGTILSSLSFDREQQSTYTFQ
LKAVDGGVPPRSAYVGVTINVLDENDNAPYITAPSNTSHKLLTPQTRLGETVSQVAAE
DFDSGVNAELIYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSDRGKP
PRYGTALVHLYVNETLANRTLLETLLGHSLDTPLDIDIAGDPEYERSKQRGNILFGVV
AGVVAVALLIALAVLVRYCRQREAKSGYQAGKKETKDLYAPKPSGKASKGNKSKGKKS
KSPKPVKPVEDEDEAGLQKSLKFNLMSDAPGDSPRIHLPLNYPPGSPDLGRHYRSNSP
LPSIQLQPQSPSASKKHQVVQDLLPANTFVGTGDTTSTGSEQYSDYSYRTNPPKYPSK
QLPHRRVTFSATSQAQELQDPSQHSYYDSGLEESETPSSKSSSGPRLGPLALPEDHYE
RTTPDGSIGEMEHPENDLRPLPDVAMTGTCTRECSEFGHSDTCWMPGQSSPSRRTKSS
ALKLSTFVPYQDRGGQEPAGAGSPSPPEDRNTKTAPVRLLPSYSAFSHSSHDSCKDSA
TLEEIPLTQTSDFPPAATPASAQTAKREIYL"
BASE COUNT 849 a 1249 c 1066 g 735 t
ORIGIN
1 aatgacaaca cacccaactt cgcctcacca gtcatcactc tggccatccc tgagaacacc
61 aacatcggct cactcttccc catcccgctg gcttcagacc gtgatgctgg tcccaacggt
121 gtggcatcct atgagctgca ggctgggcct gaggcccagg agctatttgg gctgcaggtg
181 gcagaggacc aggaggagaa gcaaccacag ctcattgtga tgggcaacct ggaccgtgag
241 cgctgggact cctatgacct caccatcaag gtgcaggatg gcggcagccc cccacgcgcc
301 agcagtgccc tgctgcgtgt caccgtgctt gacaccaatg acaacgcccc caagtttgag
361 cggccctcct atgaggccga actatctgag aatagcccca taggccactc ggtcatccag
421 gtgaaggcca atgactcaga ccaaggtgcc aatgcagaaa tcgaatacac attccaccag
481 gcgcccgaag ttgtgaggcg tcttcttcga ctggacagga acactggact tatcactgtt
541 cagggcccgg tggaccgtga ggacctaagc accctgcgct tctcagtgct tgctaaggac
601 cgaggcacca accccaagag tgcccgtgcc caggtggttg tgaccgtgaa ggacatgaat
661 gacaatgccc ccaccattga gatccggggc atagggctag tgactcatca agatgggatg
721 gctaacatct cagaggatgt ggcagaggag acagctgtgg ccctggtgca ggtgtctgac
781 cgagatgagg gagagaatgc agctgtcacc tgtgtggtgg caggtgatgt gcccttccag
841 ctgcgccagg ccagtgagac aggcagtgac agcaagaaga agtatttcct gcagactacc
901 accccgctag actacgagaa ggtcaaaaac tacaccattg agattgtggc tgtggactct
961 ggcaaccccc cactctccag cactaactcc ctcaaggtgc aggtggtgga cgtcaatgac
1021 aacgcacctg tcttcactca gagtgtcact gaggtcgcct tcccggaaaa caacaagcct
1081 ggtgaagtga ttgctgagat cactgccagt gatgctgact ctggctctaa tgctgagctg
1141 gtttactctc tggagcctga gccggctgct aagggcctct tcaccatctc acccgagact
1201 ggagagatcc aggtgaagac atctctggat cgggaacagc gggagagcta tgagttgaag
1261 gtggtggcag ctgaccgggg cagtcctagc ctccagggca cagccactgt ccttgtcaat
1321 gtgctggact gcaatgacaa tgaccccaaa tttatgctga gtggctacaa cttctcagtg
1381 atagagaaca tgccagcact gagtccagtg ggcatggtga ctgtcattga tggagacaag
1441 ggggagaatg cccaggtgca gctctcagtg gagcaggaca acggtgactt tgttatccag
1501 aatggcacag gcaccatcct atccagcctg agctttgatc gagagcaaca aagcacctac
1561 accttccagc tgaaggcagt ggatggtggc gtcccacctc gctcagctta cgttggtgtc
1621 accatcaatg tgctggacga gaatgacaac gcaccctata tcactgcccc ttctaacacc
1681 tctcacaagc tgctgacccc ccagacacgt cttggtgaga cggtcagcca ggtggcagcc
1741 gaggactttg actctggtgt caatgctgag ctgatctaca gcattgcagg tggcaaccct
1801 tatggactct tccagattgg gtcacattca ggtgccatca ccctggagaa ggagattgag
1861 cggcgccacc atgggctaca ccgcctggtg gtgaaggtca gtgaccgcgg caagccccca
1921 cgctatggca cagccttggt ccatctttat gtcaatgaga ctctggccaa ccgcacgctg
1981 ctggagaccc tcctgggcca cagcctggac acgccgctgg atattgacat tgctggggat
2041 ccagaatatg agcgctccaa gcagcgtggc aacattctct ttggtgtggt ggctggtgtg
2101 gtggccgtgg ccttgctcat cgccctggcg gttcttgtgc gctactgcag acagcgggag
2161 gccaaaagtg gttaccaggc tggtaagaag gagaccaagg acctgtatgc ccccaagccc
2221 agtggcaagg cctccaaggg aaacaaaagc aaaggcaaga agagcaagtc cccaaagccc
2281 gtgaagccag tggaggacga ggatgaggcc gggctgcaga agtccctcaa gttcaacctg
2341 atgagcgatg cccctgggga cagtccccgc atccacctgc ccctcaacta cccaccaggc
2401 agccctgacc tgggccgcca ctatcgctct aactccccac tgccttccat ccagctgcag
2461 ccccagtcac cctcagcctc caagaagcac caggtggtac aggacctgct acctgcaaac
2521 acattcgtgg gcaccgggga caccacgtcc acgggctctg agcagtactc cgactacagc
2581 taccgcacca acccccccaa ataccccagc aagcagttac ctcaccgccg cgtcaccttc
2641 tcggccacca gccaggccca ggagctgcag gacccatccc agcacagtta ctatgacagt
2701 ggactggagg agtctgagac gccgtccagc aagtcatcct cagggcctcg actcggtccc
2761 ctggccctgc ctgaggatca ctatgagcgc accacccctg atggcagcat aggagagatg
2821 gagcaccccg agaatgacct tcgccctttg cctgatgtcg ccatgacagg cacatgtacc
2881 cgggagtgca gtgagtttgg ccactctgac acatgctgga tgcctggcca gtcatctccc
2941 agccgccgga ccaagagcag cgccctcaaa ctctccacct tcgtgcctta ccaggaccga
3001 ggagggcagg agcctgcggg cgccggcagc cccagccccc cggaagaccg gaacaccaaa
3061 acggcccccg tgcgcctcct gccctcctac agtgccttct cccacagtag ccatgattcc
3121 tgcaaggact cggccacctt ggaggaaatc cccctgaccc agacctcgga cttcccaccc
3181 gcagccacac cggcatctgc ccagacggcc aagcgcgaga tctacctgtg agccccctac
3241 tggccggccg gcccccctcc cccagccgcc ggccagctcc caaatggccc attccagggc
3301 ctcactctcc accccttcag cgtggacttc ctggccaggg ccccaagtgg gggtatcact
3361 gacctcatga ccacgctggc ccttctccca tgcagggtcc aggtcctctc ccctcatttc
3421 catctcccag cccccagggg ccccttcccc tttatggggc ttcccccagc tgatgcccaa
3481 gagggctcct ctgcaatgac tgggctcctt cccttgactt ccagggagca ccccctcgat
3541 ttgggcagat ggtggaatca agggtgggca gcgtacttct aactcattgt ttccctcatg
3601 gccgaccagg gcggggatag catgcccaat tttagccctg aagcagggct gaactgggga
3661 gcccctttcc ctgggagctc ccagaggaaa ctcttgacca ccagtggctc cctgaagggc
3721 ttttgttacc aaaggtgggg tagggacggg ggtgggagtg gagcggaggc cttgttttcc
3781 cgtgctgctc ctggactggc ccacctgcct gccacatgcc cacgcctagt cccatctggg
3841 cccccattcc ctgctggtca tgcagtgtct gtatataagg accttggaat gacgtcccc
//