LOCUS AK056528 3313 bp mRNA linear HUM 09-JAN-2008
DEFINITION Homo sapiens cDNA FLJ31966 fis, clone NT2RP7007925, weakly similar
to Homo sapiens contactin associated protein (Caspr) mRNA.
ACCESSION AK056528
VERSION AK056528.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3313)
AUTHORS Isogai,T., Otsuki,T. and Sugiyama,T.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Ninomiya,K., Wagatsuma,M., Kanda,K., Kondo,H., Yokoi,T.,
Kodaira,H., Furuya,T., Takahashi,M., Kikkawa,E., Omura,Y., Abe,K.,
Kamihara,K., Katsuta,N., Sato,K., Tanikawa,M., Yamazaki,M.,
Sugiyama,T., Irie,R., Otsuki,T., Sato,H., Wakamatsu,A., Ishii,S.,
Yamamoto,J., Isono,Y., Kawai-Hio,Y., Saito,K., Nishikawa,T.,
Kimura,K., Yamashita,H., Matsuo,K., Nakamura,Y., Sekine,M.,
Kikuchi,H., Murakawa,K., Kanehori,K., Takahashi-Fujii,A.,
Oshima,A., Sugiyama,A., Kawakami,B., Suzuki,Y., Sugano,S.,
Nagahari,K., Masuho,Y., Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2001)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: RAB and HRI.
FEATURES Location/Qualifiers
source 1..3313
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP7007925"
/clone_lib="NT2RP7"
/db_xref="H-InvDB:HIT000013142"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 365..3256
/codon_start=1
/protein_id="BAB71205.1"
/translation="MDSLPRLTSVLTLLFSGLWHLGLTATNYNCDDPLASLLSPMAFS
SSSDLTGTHSPAQLNWRVGTGGWSPADSNAQQWLQMDLGNRVEITAVATQGRYGSSDW
VTSYSLMFSDTGRNWKQYKQEDSIWTFAGNMNADSVVHHKLLHSVRARFVRFVPLEWN
PSGKIGMRVEVYGCSYKSDVADFDGRSSLLYRFNQKLMSTLKDVISLKFKSMQGDGVL
FHGEGQRGDHITLELQKGRLALHLNLGDSKARLSSSLPSATLGSLLDDQHWHSVLIER
VGKQVNFTVDKHTQHFRTKGETDALDIDYELSFGGIPVPGKPGTFLKKNFHGCIENLY
YNGVNIIDLAKRRKHQIYTVGNVTFSCSEPQIVPITFVNSSGSYLLLPGTPQIDGLSV
SFQFRTWNKDGLLLSTELSEGSGTLLLSLEGGILRLVIQKMTERVAEILTGSNLNDGP
WHSVSINARRNRITLTLDDEAAPPAPDSTWVQIYSGNSYYFGGCPDNLTDSQCLNPIK
AFQGCMRLIFIDNQPKDLISVQQGSLGNFSDLHIDLCSIKDRCLPNYCEHGGSCSQSW
TTFYCNCSDTSYTGATCHNSIYEQSCEVYRHQGNTAGFFYIDSDGSGPLGPLQVYCNI
TEDKIWTSVQHNNTELTRVRGANPEKPYAMALDYGGSMEQLEAVIDGSEHCEQEVAYH
CRRSRLLNTPDGTPFTWWIGRSNERHPYWGGSPPGVQQCECGLDESCLDIQHFCNCDA
DKDEWTNDTGFLSFKDHLPVTQIVITDTDRSNSEAAWRIGPLRCYGDRRFWNAVSFYT
EASYLHFPTFHAEFSADISFFFKTTALSGVFLENLGIKDFIRLEISSPSEITFAIDVG
NGPVELVVQSPSLLNDNQWHYVRAERNLKETSLQVDNLPRSTRETSEEGHFRLQLNSQ
LFVGGTSSRQKGFLGCIRSLHLNGQKMDLEERAKVTSGVRPGCSIKKLK"
BASE COUNT 834 a 841 c 891 g 747 t
ORIGIN
1 gattccagct ctcgcgcccg acgaggtgga tttggctgtc caccgagctc cggcgcctgt
61 cgttctaatt gggtttggat ttgcaccgtt aaggaggggg gaagagaagg aagaggcggg
121 cgaggaaggc gagtccagct agcggctgtt gcggggaccg tagccccagc tgcagctccg
181 aagaatcccc cgccacggtt tcggtggagc gtctgggcac gggatggagt gaaagagcga
241 gtgcctctcc aagcgggggt gggagggggt caggctgtgc agaggagaga gacagcgaga
301 agaagccgcg gctggctact gcgaatttgg gattcgattg ggagggaccg ctcactcggg
361 ggaaatggat tctttaccac ggctgaccag cgttttgact ttgctgttct ctggcttgtg
421 gcatttagga ttaacagcga caaactacaa ctgtgatgat ccactagcat ccctgctctc
481 tccaatggct ttttccagtt cctcagacct cactggcact cacagcccag ctcaactcaa
541 ctggagagtt ggaactggcg gttggtcccc agcagattcc aatgctcaac agtggctcca
601 gatggacctg ggaaacagag tagagattac agcagtggcc acgcagggaa gatacggaag
661 ctctgactgg gtgacgagtt acagcctgat gttcagtgac acaggacgca actggaaaca
721 gtacaaacaa gaagacagca tctggacctt tgcaggaaac atgaatgctg acagcgtggt
781 gcaccacaag ctattgcact cagtgagagc ccgatttgtt cgctttgtgc ccctggaatg
841 gaatcccagt gggaagattg gcatgagagt cgaggtctac ggatgttcct ataaatcaga
901 cgttgctgac tttgatggcc gaagctcact tctgtacagg ttcaatcaga agttgatgag
961 tactctcaaa gatgtgatct ccctgaagtt caagagcatg caaggagatg gggtcctgtt
1021 ccatggagaa ggtcagcgtg gagaccacat caccttggaa ctccagaagg ggaggctcgc
1081 cctacacctc aatttgggtg acagcaaagc gcggctcagc agcagcttgc cctctgccac
1141 cctgggcagc ctcctggatg accagcactg gcactcggtc ctcattgagc gggtgggcaa
1201 gcaggtgaac ttcacggtgg acaagcacac acagcacttc cgcaccaagg gcgagacgga
1261 tgccttagac attgactatg agcttagttt tggaggaatt ccagtaccag gaaaacctgg
1321 gaccttttta aagaaaaact tccatggatg catcgaaaac ctttactaca atggagtaaa
1381 cataattgac ctggctaaga gacgaaagca tcagatctat actgtgggca atgtcacttt
1441 ttcctgctcc gaaccacaga ttgtgcccat cacatttgtc aactccagcg gcagctattt
1501 gctgctgccc ggcacccccc aaattgatgg gctctcagtg agtttccagt ttcgaacatg
1561 gaacaaggat ggtctgcttc tgtccacaga gctgtctgag ggctcgggaa ccctgctgct
1621 gagcctggag ggtggaatcc tgagactcgt gattcagaaa atgacagaac gcgtagctga
1681 aatcctcaca ggcagcaact tgaatgatgg cccgtggcac tcggttagca tcaacgccag
1741 gaggaaccgc atcacgctca ctctggatga tgaagcagca cccccggctc cagacagcac
1801 ttgggtgcag atttattctg gaaatagcta ctattttgga gggtgccccg acaatctcac
1861 cgattcccaa tgtttaaatc ccattaaggc tttccaaggc tgcatgaggc tcatctttat
1921 tgataaccag cccaaggacc tcatttcagt tcagcaaggt tccctgggga attttagtga
1981 tttacacatt gatctgtgta gcatcaaaga caggtgtttg ccaaactact gtgaacatgg
2041 aggaagctgc tcccagtcct ggactacctt ctattgtaac tgcagtgaca caagttacac
2101 tggtgccacc tgccacaact ccatctacga gcaatcctgc gaggtgtaca ggcaccaggg
2161 gaatacagcc ggcttcttct acatcgactc agatggcagc ggcccactgg gacctctcca
2221 ggtgtactgc aatatcactg aggacaagat ctggacatca gtgcagcaca acaatacaga
2281 gctgacccga gtgcggggcg ctaaccctga gaagccctat gccatggcct tggactacgg
2341 gggcagcatg gaacagctgg aggccgtgat cgacggctct gagcactgtg agcaggaggt
2401 ggcctaccac tgcaggaggt cccgcctgct caacacgccg gatggaacac catttacctg
2461 gtggattggg cggtccaatg aaaggcaccc ttactgggga ggttcccctc ctggggtcca
2521 gcagtgtgag tgtggcctag acgagagctg cctggacatt cagcactttt gcaattgcga
2581 cgctgacaag gatgaatgga caaatgatac tggctttctt tccttcaaag accacttgcc
2641 tgtcactcag atagttatca ctgataccga cagatcaaac tcagaagccg cttggagaat
2701 tggtcccttg cgttgctatg gtgaccgacg cttctggaac gccgtctcat tttatacaga
2761 agcctcttac ctccactttc ctaccttcca tgcggaattc agtgccgata tttccttctt
2821 ttttaaaacc acagcattat ccggagtttt cctagaaaat cttggcatta aagacttcat
2881 tcgactcgaa ataagctctc cttcagagat cacctttgcc atcgatgttg ggaatggtcc
2941 tgtggagctt gtagtccagt ctccttctct tctgaatgac aaccaatggc actatgtccg
3001 ggctgagagg aacctcaagg agacctccct gcaggtggac aaccttccaa ggagcaccag
3061 ggagacgtcg gaggagggcc attttcgact gcagctgaac agccagttgt ttgtaggggg
3121 aacgtcatcc agacagaaag gcttcctagg atgcattcgc tccttacact tgaatggaca
3181 gaaaatggac ctggaagaga gggcaaaggt cacatctgga gtcaggccag gctgcagcat
3241 aaagaaattg aaataaaagt ttaaaatagt acccggttca atgaaagagc ctaaaccatc
3301 ttaactcagc ttt
//