LOCUS AK056471 2750 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ31909 fis, clone NT2RP7004656, highly similar
to Homo sapiens PHD finger protein 15 (PHF15), mRNA.
ACCESSION AK056471
VERSION AK056471.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 2750)
AUTHORS Isogai,T., Otsuki,T. and Sugiyama,T.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Tashiro,H., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Sugiyama,T., Irie,R.,
Otsuki,T., Sato,H., Wakamatsu,A., Ishii,S., Yamamoto,J., Isono,Y.,
Kawai-Hio,Y., Saito,K., Nishikawa,T., Kimura,K., Yamashita,H.,
Matsuo,K., Nakamura,Y., Sekine,M., Kikuchi,H., Kanda,K.,
Wagatsuma,M., Murakawa,K., Kanehori,K., Takahashi-Fujii,A.,
Oshima,A., Sugiyama,A., Kawakami,B., Suzuki,Y., Sugano,S.,
Nagahari,K., Masuho,Y., Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2001)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: RAB and HRI.
FEATURES Location/Qualifiers
source 1..2750
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP7004656"
/clone_lib="NT2RP7"
/db_xref="H-InvDB:HIT000013085"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 41..2593
/codon_start=1
/note="highly similar to Homo sapiens PHD finger protein
15 (PHF15), mRNA"
/protein_id="BAG51724.1"
/translation="MVPTAAIAVGGYFLGGMEEKRRKYSISSDNSDTTDSHATSTSAS
RCSKLPSSTKSGWPRQNEKKPSEVFRTDLITAMKIPDSYQLSPDDYYILADPWRQEWE
KGVQVPAGAEAIPEPVVRILPPLEGPPAQASPSSTMLGEGSQPDWPGGSRYDLDEIDA
YWLELINSELKEMERPELDELTLERVLEELETLCHQNMARAIETQEGLGIEYDEDVVC
DVCRSPEGEDGNEMVFCDKCNVCVHQACYGILKVPTGSWLCRTCALGVQPKCLLCPKR
GGALKPTRSGTKWVHVSCALWIPEVSIGCPEKMEPITKISHIPASRWALSCSLCKECT
GTCIQCSMPSCVTAFHVTCAFDHGLEMRTILADNDEVKFKSFCQEHSDGGPRNEPTSE
PTEPSQAGEDLEKVTLRKQRLQQLEEDFYELVEPAEVAERLDLAEALVDFIYQYWKLK
RKANANQPLLTPKTDEVDNLAQQEQDVLYRRLKLFTHLRQDLERVRNLCYMVTRRERT
KHAICKLQEQIFHLQMKLIEQDLCRERSGRRAKGKKSDSKRKGCEGSKGSTEKKEKVK
AGPDSVLGQLAGLSTSFPIDGTFFNSWLAQSVQITAENMAMSEWPLNNGHREDPAPGL
LSEELLQDEETLLSFMRDPSLRPGDPARKARGRTRLPAKKKPPPPPPQDGPGSRTTPD
KAPKKTWGQDAGSGKGGQGPPTRKPPRRTSSHLPSSPAAGDCPILATPESPPPLAPET
PDEAASVAADSDVQVPGPAASPKPLGRLRPPRESKVTRRLPGARPDAGMGPPSAVAER
PKVSLHFDTETDGYFSDGEMSDSDVEAEDGGVQRGPREAGAEEVVRMGVLAS"
BASE COUNT 631 a 807 c 846 g 466 t
ORIGIN
1 gttttaaaaa gaaacagaaa catacacagg gggttggtga atggtgccga ccgcggccat
61 cgcagttgga ggctattttt tgggggggat ggaagagaag aggcgaaaat actccatcag
121 cagtgacaac tctgacacca ctgacagtca tgcgacatct acatccgcat caagatgctc
181 caaactgccc agcagcacca agtcgggctg gccccgacag aacgaaaaga agccctccga
241 ggttttccgg acagacttga tcacagccat gaagatcccg gactcatacc agctcagccc
301 ggatgactac tacatcctgg cagacccatg gcgacaggaa tgggagaaag gtgtgcaggt
361 gcctgccggg gcagaggcca tcccagagcc cgtggtgagg atcctcccac cactggaagg
421 cccccctgcc caggcatccc cgagcagcac catgcttggt gagggctccc agcctgattg
481 gccagggggc agccgctatg acttggacga gattgatgcc tactggctgg agctcatcaa
541 ctcggagctt aaggagatgg agaggccgga gctggacgag ctgacattag agcgtgtgct
601 ggaggagctg gagaccctgt gccaccagaa tatggccagg gccattgaga cgcaggaggg
661 gctgggcatc gagtacgacg aggatgttgt ctgcgacgtg tgtcgctctc ctgagggcga
721 ggatggcaac gagatggtct tctgtgacaa gtgcaacgtc tgtgtgcatc aggcatgcta
781 cgggatcctc aaggtgccca cgggcagctg gctgtgccgg acgtgtgccc tgggtgtcca
841 gccaaagtgc ctgctctgcc ccaagcgagg aggagccttg aagcccacta gaagtgggac
901 caagtgggtg catgtcagct gtgccctatg gattcctgag gtcagcatcg gctgcccaga
961 gaagatggag cccatcacca agatctcgca tatcccagcc agccgctggg ctctgtcctg
1021 cagcctctgc aaggaatgca caggcacctg catccagtgt tccatgcctt cctgcgtcac
1081 agcgttccat gtcacatgcg cctttgacca cggcctggaa atgcggacta tattagcaga
1141 caacgatgag gtcaagttca agtcattctg ccaggagcac agtgacgggg gcccacgtaa
1201 tgagcccaca tctgagccca cggaacccag ccaggctggc gaggacctgg aaaaggtgac
1261 cctgcgcaag cagcggctgc agcagctaga ggaggacttc tacgagctgg tggagccggc
1321 tgaggtggct gagcggctgg acctggctga ggcactggtc gacttcatct accagtactg
1381 gaagctgaag aggaaagcca atgccaacca gccgctgctg acccccaaga ccgacgaggt
1441 ggacaacctg gcccagcagg agcaggacgt cctctaccgc cgcctgaagc tcttcaccca
1501 tctgcggcag gacctagaga gggttagaaa tctgtgctac atggtgacaa ggcgcgagag
1561 aacgaaacac gccatctgca aactccagga gcagatattc cacctgcaga tgaaacttat
1621 tgaacaggat ctgtgtcgag agcggtctgg gaggagagca aagggcaaga agagtgactc
1681 gaagaggaag ggctgcgagg gctccaaggg cagcactgag aagaaagaga aagtgaaggc
1741 ggggcctgac tcagtcctgg ggcagctggc aggcctgtcc acctcattcc ccatcgatgg
1801 caccttcttc aacagctggc tggcacagtc ggtgcagatc acagcagaga acatggccat
1861 gagcgagtgg ccactgaaca atgggcaccg cgaggaccct gctccagggc tgctgtcaga
1921 ggaactgctg caggacgagg agacactgct cagcttcatg cgggacccct cgctgcgacc
1981 tggtgaccct gctaggaagg cccgaggccg cacccgcctg cctgccaaga agaaaccacc
2041 accaccacca ccgcaggacg ggcctggttc acggacgact ccagacaaag cccccaagaa
2101 gacctggggc caggatgcag gcagtggcaa ggggggtcaa gggccaccta ccaggaagcc
2161 accacgtcgg acatcttctc acttgccgtc cagccctgca gccggggact gtcccatcct
2221 agccacccct gaaagccccc cgccactggc ccctgagacc ccggacgagg cagcctcagt
2281 agctgctgac tcagatgtcc aagtgcctgg ccctgcagca agccctaagc ctttgggccg
2341 gctccggcca ccccgcgaga gcaaggtaac ccggagattg ccgggtgcca ggcctgatgc
2401 tgggatggga ccaccttcag ctgtggctga gaggcccaag gtcagcctgc attttgacac
2461 tgagactgat ggctacttct ctgatgggga gatgagcgac tcagatgtag aggccgagga
2521 cggtggggtg cagcggggtc cccgggaggc aggggcagag gaggtggtcc gcatgggcgt
2581 actggcctcc taactcaccc ccttccctgt cccaggccct gccctggtcc ccccacaagg
2641 cctcagccca gtcacaactg ccatttccag tctctgctga gtgtcccaga ccctcgaggc
2701 tgccactccg tcgtggtttt atttttaata tagagagagt tttgaattct
//