LOCUS AK056469 3251 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ31907 fis, clone NT2RP7004396, highly similar
to Homo sapiens SH3 multiple domains 1 (SH3MD1), mRNA.
ACCESSION AK056469
VERSION AK056469.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3251)
AUTHORS Isogai,T., Otsuki,T. and Sugiyama,T.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Tashiro,H., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Sugiyama,T., Irie,R.,
Otsuki,T., Sato,H., Wakamatsu,A., Ishii,S., Yamamoto,J., Isono,Y.,
Kawai-Hio,Y., Saito,K., Nishikawa,T., Kimura,K., Yamashita,H.,
Matsuo,K., Nakamura,Y., Sekine,M., Kikuchi,H., Kanda,K.,
Wagatsuma,M., Murakawa,K., Kanehori,K., Takahashi-Fujii,A.,
Oshima,A., Sugiyama,A., Kawakami,B., Suzuki,Y., Sugano,S.,
Nagahari,K., Masuho,Y., Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2001)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: RAB and HRI.
FEATURES Location/Qualifiers
source 1..3251
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2RP7004396"
/clone_lib="NT2RP7"
/db_xref="H-InvDB:HIT000013083"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuronal precursor cells after
5-weeks retinoic acid (RA) induction."
/organism="Homo sapiens"
CDS 17..3181
/codon_start=1
/note="highly similar to Homo sapiens SH3 multiple
domains 1 (SH3MD1), mRNA"
/protein_id="BAG51723.1"
/translation="MQLLDKFPIEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLK
PIDEYCRALVRLPPHISQCDEVFRFFEARPEDVNPPKEDYGSSKRKSVWLSSWAESPK
KDVTGADATAEPMILEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEE
QGWVPATYLEAQNGTRDDSDINTSKTGEEEKYVTVQPYTSQSKDEIGFEKGVTVEVIR
KNLEGWWYIRYLGKEGWAPASYLKKAKDDLPTRKKNLAGPVEIIGNIMEISNLLNKKA
SGDKETPPAEGEGHEAPIAKKEISLPILCNASNGSAVGVPDRTVSRLAQGSPAVARIA
PQRAQISSPNLRTRPPPRRESSLGFQLPKPPEPPSVEVEYYTIAEFQSCISDGISFRG
GQKAEVIDKNSGGWWYVQIGEKEGWAPASYIDKRKKPNLSRRTSTLTRPKVPPPAPPS
KPKEAEEGPTWASESQDSPRKLKYEEPEYDIPAFGFDSEPELSEEPVEDRASGERRPA
QPHRPSPASSLQRARFKVGESSEDVALEEETIYENEGFRPYAEDTLSARGSSGDSDSP
GSSSLSLTRKNSPKSGSPKSSSLLKLKAEKNAQAEMGKNHSSASFSSSITINTTCCSS
SSSSSSSLSKTSGDLKPRSASDAGIRGTPKVRAKKDADANAGLTSCPRAKPSVRPKPF
LNRAESQSQEKMDISTLRRQLRPTGQLRGGLKGSKSEDSELPPQTASEAPSEGSRRSS
SDLITLPATTPPCPTKKEWEGPATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGW
WYVRFGELEGWAPSHYLVLDENEQPDPSGKELDTVPAKGRQNEGKSDSLEKIERRVQA
LNTVNQSKKATPPIPSKPPGGFGKTSGTPAVKMRNGVRQVAVRPQSVFVSPPPKDNNL
SCALRRNESLTATDGLRGVRRNSSFSTARSAAAEAKGRLAERAASQGSDSPLLPAQRN
SIPVSPVRPKPIEKSQFIHNNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWW
YCQILDGVKPFKGWVPSNYLEKKN"
BASE COUNT 753 a 1002 c 963 g 533 t
ORIGIN
1 gttctttgac ctgcagatgc agcttttgga taagtttccc attgaaggtg gccagaagga
61 ccccaagcaa aggatcatcc ccttcctccc aggcaagatc ctcttccgca gaagccacat
121 ccgggacgta gctgtgaaga gactgaagcc catcgatgaa tactgccggg cacttgtccg
181 gctgcccccc cacatctcac agtgtgacga agtcttccgg ttcttcgagg ctcgacccga
241 ggatgtcaac cctccaaaag aggactatgg cagttccaag aggaaatcag tgtggctgtc
301 cagctgggct gagtcgccca agaaggacgt gacaggtgcc gacgccaccg ccgagcccat
361 gatcctggaa cagtacgtgg tggtgtccaa ctataagaag caggagaact cggagctgag
421 cctccaggcc ggggaggtgg tggatgtcat cgagaagaac gagagcggct ggtggttcgt
481 gagcacttct gaggagcagg gctgggtccc tgccacctac ctggaggccc agaatggtac
541 tcgggatgac tccgacatca acacctctaa gactggagaa gaggagaagt atgtcaccgt
601 gcagccttac accagccaaa gcaaggacga gattggcttt gagaagggcg tcacagtgga
661 ggtgatccgg aagaatctgg aaggctggtg gtatatcaga tacctgggca aagagggctg
721 ggcgccagca tcctacctga agaaggccaa ggatgacctg ccaacccgga agaagaacct
781 ggccggccca gtggagatca ttgggaacat catggagatc agcaacctgc tgaacaagaa
841 ggcgtctggg gacaaggaaa ctccaccagc cgaaggcgag ggccatgagg cccccattgc
901 caagaaggag atcagcctgc ccatcctctg caatgcctcc aatggcagtg ccgtgggcgt
961 tcctgacagg actgtctcca ggctggccca gggctctcca gctgtggcca ggattgcccc
1021 tcagcgggcc cagatcagct ccccgaacct acggacaaga cctccaccac gcagagaatc
1081 cagcctgggg ttccaactgc caaagccacc agagccccct tctgttgagg tggagtacta
1141 caccattgcc gaattccagt cgtgcatttc cgatggcatc agctttcggg gtggacagaa
1201 ggcagaggtc attgataaga actcaggtgg ctggtggtac gtgcagatcg gtgagaagga
1261 gggctgggcc cccgcatcat acatcgataa gcgcaagaag cccaacctga gccgccgcac
1321 aagcacgctg acccggccca aggtgccccc gccagcaccc cccagcaagc ccaaggaggc
1381 cgaggagggc cctacgtggg ccagtgagag ccaggactcc ccgcggaagc tcaagtatga
1441 ggagcctgag tatgacatcc ctgcattcgg ctttgactca gagcctgagc tgagcgagga
1501 gcccgtggag gacagagcct caggggagag gcggcctgcc cagccccacc ggccctcgcc
1561 ggcctcttct ctgcagcggg cccgcttcaa ggtgggtgag tcttcagagg atgtggccct
1621 ggaagaggag accatctatg agaatgaggg cttccggcca tatgcagagg acaccctgtc
1681 agccagaggc tcctccgggg acagcgactc cccaggcagc tcctcgctgt ccctgaccag
1741 gaaaaactcc cccaaatcag gctcccccaa gtcatcatca ctcctaaagc tcaaggcaga
1801 gaagaatgcc caggcagaaa tggggaagaa ccactcctca gcctcctttt cctcatccat
1861 caccatcaac accacttgct gctcctcctc ttcctcctcc tcctcttcct tgtccaaaac
1921 cagtggcgac ctgaagcccc gctctgcttc ggacgcaggc atccgcggca ctcccaaggt
1981 cagggcaaag aaggatgctg atgcgaacgc tgggctgacc tcctgtcccc gggccaagcc
2041 atcggtccgg cccaagccat tcctaaaccg agcagagtcg cagagccaag agaagatgga
2101 catcagcact ttacggcgcc agctgagacc cacaggccag ctccgtggag ggctcaaggg
2161 ctccaagagt gaggattcgg agctgccccc gcagacggcc tccgaggctc ccagtgaggg
2221 gtctaggaga agctcatccg acctcatcac cctcccagcc accactcccc catgtcccac
2281 caagaaggaa tgggaagggc cagccacctc gtacatgaca tgcagcgcct accagaaggt
2341 ccaggactcg gagatcagct tccccgcggg cgtggaggtg caggtgctgg agaagcagga
2401 gagcgggtgg tggtatgtga ggtttgggga gctggagggc tgggcccctt cccactattt
2461 ggtgctggat gagaacgagc aacctgaccc ctctggcaaa gagctggaca cagtgcccgc
2521 caagggcagg cagaacgaag gcaagtcaga cagcctggag aagatcgaga ggcgcgtcca
2581 agcactgaac accgtcaacc agagcaagaa ggccacgccc cccatcccct ccaaacctcc
2641 cgggggcttt ggcaagacct caggcactcc agcggtgaag atgaggaacg gagtgcggca
2701 ggtggcggtc aggccccagt cggtgtttgt gtccccgcca cccaaggaca acaacctgtc
2761 ctgcgccctg cggaggaatg agtcactcac ggccactgat ggcctccgag gcgtccgacg
2821 gaactcctcc tttagcactg ctcgctccgc tgccgccgag gccaagggcc gcctggccga
2881 acgggctgcc agccagggtt cagactcacc cctactgccc gcccagcgca acagcatccc
2941 cgtgtcccct gtgcgcccca agcccatcga gaagtctcag ttcatccaca ataacctcaa
3001 agatgtgtac gtctctatcg cagactacga gggggatgag gagacagcag gcttccagga
3061 gggggtgtcc atggaggttc tggagaggaa ccctaatggc tggtggtact gccagatcct
3121 ggatggtgtg aagcccttca aaggctgggt gccttccaac taccttgaga aaaagaacta
3181 gcagagggcc tgggctcttc cagcctcagt gtgcctctct ggccgcccac tggatgagcg
3241 gtgagacgaa c
//