LOCUS AK056026 3189 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ31464 fis, clone NT2NE2001337, highly similar
to Tripartite motif-containing protein 16.
ACCESSION AK056026
VERSION AK056026.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3189)
AUTHORS Isogai,T., Otsuki,T. and Sugiyama,T.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Tashiro,H., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Sugiyama,T., Irie,R.,
Otsuki,T., Sato,H., Wakamatsu,A., Ishii,S., Yamamoto,J., Isono,Y.,
Kawai-Hio,Y., Saito,K., Nishikawa,T., Kimura,K., Yamashita,H.,
Matsuo,K., Nakamura,Y., Sekine,M., Kikuchi,H., Kanda,K.,
Wagatsuma,M., Murakawa,K., Kanehori,K., Takahashi-Fujii,A.,
Oshima,A., Sugiyama,A., Kawakami,B., Suzuki,Y., Sugano,S.,
Nagahari,K., Masuho,Y., Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2001)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: RAB and HRI.
FEATURES Location/Qualifiers
source 1..3189
/cell_line="NT2"
/cell_type="teratocarcinoma"
/clone="NT2NE2001337"
/clone_lib="NT2NE2"
/db_xref="H-InvDB:HIT000012640"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/note="mRNA from NT2 neuron after the differentiation of
NT2 neuronal precursor cells."
/organism="Homo sapiens"
CDS 1229..2533
/codon_start=1
/note="highly similar to Tripartite motif-containing
protein 16"
/protein_id="BAG51608.1"
/translation="MIMEDWTCKLQNRVLPSEDPALSQKGYLKKENMAALCRTAESQA
ELQCTQLDLERKLKLNENAISRLQANQKSVLVSVSEVKAVAEMQFGELLAAVRKAQAN
VMLFLEEKEQAALSQANGIKAHLEYRSAEMEKSKQELERMAAISNTVQFLEEYCKFKN
TEDITFPSVYVGLKDKLSGIRKVITESTVHLIQLLENYKKKLQEFSKEEEYDIRTQVS
AVVQRKYWTSKPEPSTREQFLQYAYDITFDPDTAHKYLRLQEENRKVTNTTPWEHPYP
DLPSRFLHWRQVLSQQSLYLHRYYFEVEIFGAGTYVGLTCKGIDRKGEERNSCISGNN
FSWSLQWNGKEFTAWYSDMETPLKAGPFRRLGVYIDFPGGILSFYGVEYDTMTLVHKF
ACKFSEPVYAAFWLSKKENAIRIVDLGEEPEKPAPSLVGTAP"
BASE COUNT 756 a 777 c 845 g 811 t
ORIGIN
1 tttttttctc tggaggatct ccgcgcgtgg cgagtctgtg tcctccctgt cccccagagc
61 agacaccctc tctgtgtctg gaccggggag gagcagactc tggacagggt gtgtgtgttc
121 agcagtggat tgtcagactt ggggtcccgg ctgctccctt ttgggtctct ccccgggccc
181 gctgatctga ctgtaattcc ttctgctgga gctagggttc ggccaccttg acgcgccccc
241 tctgcccctg gagcgtgtct ttgggttttg tgtgtgtggg agtggggtgt atgtgtgttt
301 cttatccgag acacctctgg gtcgtttgct tggaaaccgg ctgagggccc gcataccctg
361 gagcatttgg ttgcaaagtg aggcaggtag cgcccaaggc tcctgtacca gggccaggtt
421 aggcaccaac gcgtccctta tgtctctgca gcctgcagtg tggtggaacc gtttcataga
481 ctgaagtgtg aacgtaggag gggatggata tcagagatct gtttatccac attttcagag
541 agtggtattg ctctgatgtg agcgtaggca ggttactctc tgtgtctcgt gttctttacc
601 tgtaatttga ggtttgttgt acctactatt aagtggtggt tgtgaggatt aaatggaatt
661 ttgacatgca acagttgaca cagggccaga caccaagtaa gggatcaatc agttgttgct
721 tttattaata gtaggcatcc atctgcccat ttgcacgtaa gaaggaaaca cccaagaatg
781 aaaagtagct tgttgtaggt cacccagcca actagcacat agtggaaatt agaatccagg
841 cactcccagc agggcacttt ccaccaccct gcacttttgt attcatcagg cacagtatcc
901 ttactgttgt ctgtaactgt ctatgttccc agtgtctgac tctgcagggc cctagtggta
961 taaaggtact gagacttgcc tgtgttcagg gcttcctgaa gattaaatgg ctgccgaagt
1021 tcttgagttt agctttagct caaaagatac tgcgtcagac tctgcgttct gagtagagtc
1081 tcagagaatg aaaaaagaaa tacaatgaaa aaggggaaaa cttcaatcca gaacctctta
1141 ccacagtttc tggtagaatg ctggcaattt ccaggaagat acgtggagaa cggaaaggtt
1201 gctacaccca aatagtgaag caaaggctat gattatggag gattggacct gcaaactcca
1261 gaacagagtt ctgccctctg aggaccctgc cctttcccaa aaggggtatc ttaagaagga
1321 aaatatggct gctctttgcc ggacagcaga gtcccaggct gaactccagt gcacccagtt
1381 agacttggag cggaaactca agttgaatga aaatgccatc tccaggctcc aggctaacca
1441 aaagtctgtt ctggtgtcgg tgtcagaggt caaagcggtg gctgaaatgc agtttgggga
1501 actccttgct gctgtgagga aggcccaggc caatgtgatg ctcttcttag aggagaagga
1561 gcaagctgcg ctgagccagg ccaacggtat caaggcccac ctggagtaca ggagtgccga
1621 gatggagaag agcaagcagg agctggagag gatggcggcc atcagcaaca ctgtccagtt
1681 cttggaggag tactgcaagt ttaagaacac tgaagacatc accttcccta gtgtttacgt
1741 agggctgaag gataaactct cgggcatccg caaagttatc acggaatcca ctgtacactt
1801 aatccagttg ctggagaact ataagaaaaa gctccaggag ttttccaagg aagaggagta
1861 tgacatcaga actcaagtgt ctgccgttgt tcagcgcaaa tattggactt ccaaacctga
1921 gcccagcacc agggaacagt tcctccaata tgcgtatgac atcacgtttg acccggacac
1981 agcacacaag tatctccggc tgcaggagga gaaccgcaag gtcaccaaca ccacgccctg
2041 ggagcatccc tacccggacc tccccagcag gttcctgcac tggcggcagg tgctgtccca
2101 gcagagtctg tacctgcaca ggtactattt tgaggtggag atcttcgggg caggcaccta
2161 tgttggcctg acctgcaaag gcatcgaccg gaaaggggag gagcgcaaca gttgcatttc
2221 cggaaacaac ttctcctgga gcctccaatg gaacgggaag gagttcacgg cctggtacag
2281 tgacatggag accccactca aagctggccc tttccggagg ctcggggtct atatcgactt
2341 cccgggaggg atcctttcct tctatggcgt agagtatgat accatgactc tggttcacaa
2401 gtttgcctgc aaattttcag aaccagtcta tgctgccttc tggctttcca agaaggaaaa
2461 cgccatccgg attgtagatc tgggagagga acccgagaag ccagcaccgt ccttggtggg
2521 gactgctccc tagactccag gagccatatc ccagaccttt gccagctaca gtgatgggat
2581 ttgcatttta gggtgatttg ggggcagaaa taactgctga tggtagctgg cttttgaaat
2641 cctatggggt ctctgaatga aagcattctc cagctgctct cttttgctcc atatggtgct
2701 gttctctatg tgtttgcagt aattcttttt tttttttttt gagacggagt ctcgcactgt
2761 tgcccaggct ggagagcagt ggcgcgatct tggctcactg caagctccgc ctcccgagtt
2821 caagcaattc tcctgcctca gcctcccgag tagctgggat tacaggtgcc tgccaccaca
2881 cccagctaat gttttgtatt tttagtagag atggggtttc accatgttgg ccaggcagat
2941 ctcaaactcc tgacctcgtg atgcacccac ctcggcctcc caaagtgctg ggattacatg
3001 cgtgagccac tgcgccctgc ctgtttgtag taatttttag gcaccaaatc tccctcatct
3061 tctagtgcca ttctcctctc tgttcaggta aatgtcacac tgtgcccaga atggatgacc
3121 aggaacctta aagagtggct gaaaagattg cagagttatc ataataaatt gctaacttgc
3181 gtatttcct
//