LOCUS AK055104 3095 bp mRNA linear HUM 03-JUL-2008
DEFINITION Homo sapiens cDNA FLJ30542 fis, clone BRAWH2001378, highly similar
to Rattus norvegicus SH2-B PH domain containing signaling mediator
1 (Sh2bpsm1), transcript variant 1, mRNA.
ACCESSION AK055104
VERSION AK055104.1
KEYWORDS FLI_CDNA; oligo capping; fis (full insert sequence).
SOURCE Homo sapiens (human)
ORGANISM Homo sapiens
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini;
Catarrhini; Hominidae; Homo.
REFERENCE 1 (bases 1 to 3095)
AUTHORS Isogai,T., Otsuki,T. and Sugiyama,T.
TITLE Direct Submission
JOURNAL Submitted (24-OCT-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Takao Isogai
Helix Research Institute, Genomics Laboratory; 1532-3 Yana,
Kisarazu, Chiba 292-0812, Japan
E-mail :flj-cdna@nifty.com
REFERENCE 2
AUTHORS Ota,T., Suzuki,Y., Nishikawa,T., Otsuki,T., Sugiyama,T., Irie,R.,
Wakamatsu,A., Hayashi,K., Sato,H., Nagai,K., Kimura,K., Makita,H.,
Sekine,M., Obayashi,M., Nishi,T., Shibahara,T., Tanaka,T.,
Ishii,S., Yamamoto,J., Saito,K., Kawai,Y., Isono,Y., Nakamura,Y.,
Nagahari,K., Murakami,K., Yasuda,T., Iwayanagi,T., Wagatsuma,M.,
Shiratori,A., Sudo,H., Hosoiri,T., Kaku,Y., Kodaira,H., Kondo,H.,
Sugawara,M., Takahashi,M., Kanda,K., Yokoi,T., Furuya,T.,
Kikkawa,E., Omura,Y., Abe,K., Kamihara,K., Katsuta,N., Sato,K.,
Tanikawa,M., Yamazaki,M., Ninomiya,K., Ishibashi,T., Yamashita,H.,
Murakawa,K., Fujimori,K., Tanai,H., Kimata,M., Watanabe,M.,
Hiraoka,S., Chiba,Y., Ishida,S., Ono,Y., Takiguchi,S.,
Watanabe,S., Yosida,M., Hotuta,T., Kusano,J., Kanehori,K.,
Takahashi-Fujii,A., Hara,H., Tanase,T., Nomura,Y., Togiya,S.,
Komai,F., Hara,R., Takeuchi,K., Arita,M., Imose,N., Musashino,K.,
Yuuki,H., Oshima,A., Sasaki,N., Aotsuka,S., Yoshikawa,Y.,
Matsunawa,H., Ichihara,T., Shiohata,N., Sano,S., Moriya,S.,
Momiyama,H., Satoh,N., Takami,S., Terashima,Y., Suzuki,O.,
Nakagawa,S., Senoh,A., Mizoguchi,H., Goto,Y., Shimizu,F.,
Wakebe,H., Hishigaki,H., Watanabe,T., Sugiyama,A., Takemoto,M.,
Kawakami,B., Yamazaki,M., Watanabe,K., Kumagai,A., Itakura,S.,
Fukuzumi,Y., Fujimori,Y., Komiyama,M., Tashiro,H., Tanigami,A.,
Fujiwara,T., Ono,T., Yamada,K., Fujii,Y., Ozaki,K., Hirao,M.,
Ohmori,Y., Kawabata,A., Hikiji,T., Kobatake,N., Inagaki,H.,
Ikema,Y., Okamoto,S., Okitani,R., Kawakami,T., Noguchi,S.,
Itoh,T., Shigeta,K., Senba,T., Matsumura,K., Nakajima,Y.,
Mizuno,T., Morinaga,M., Sasaki,M., Togashi,T., Oyama,M., Hata,H.,
Watanabe,M., Komatsu,T., Mizushima-Sugano,J., Satoh,T., Shirai,Y.,
Takahashi,Y., Nakagawa,K., Okumura,K., Nagase,T., Nomura,N.,
Kikuchi,H., Masuho,Y., Yamashita,R., Nakai,K., Yada,T.,
Nakamura,Y., Ohara,O., Isogai,T. and Sugano,S.
TITLE Complete sequencing and characterization of 21,243 full-length
human cDNAs
JOURNAL Nat. Genet. 36, 40-45 (2004)
REFERENCE 3
AUTHORS Nishi,T., Nakagawa,S., Senoh,A., Mizuguchi,H., Inagaki,H.,
Sugiyama,T., Irie,R., Otsuki,T., Sato,H., Ota,T., Wakamatsu,A.,
Ishii,S., Yamamoto,J., Isono,Y., Kawai-Hio,Y., Saito,K.,
Nishikawa,T., Kimura,K., Yamashita,H., Matsuo,K., Nakamura,Y.,
Sekine,M., Kikuchi,H., Kanda,K., Wagatsuma,M., Murakawa,K.,
Kanehori,K., Takahashi-Fujii,A., Oshima,A., Sugiyama,A.,
Kawakami,B., Suzuki,Y., Sugano,S., Nagahari,K., Masuho,Y.,
Nagai,K. and Isogai,T.
TITLE NEDO human cDNA sequencing project
JOURNAL Unpublished (2001)
COMMENT NEDO human cDNA sequencing project supported by Ministry of
Economy, Trade and Industry of Japan; cDNA full insert sequencing:
Research Association for Biotechnology (RAB); cDNA library
construction: Helix Research Institute (HRI) (supported by Japan
Key Technology Center etc.); 5'- & 3'-end one pass sequencing:
RAB, HRI, and Biotechnology Center, National Institute of
Technology and Evaluation; clone selection for full insert
sequencing: RAB and HRI.
FEATURES Location/Qualifiers
source 1..3095
/clone="BRAWH2001378"
/clone_lib="BRAWH2"
/db_xref="H-InvDB:HIT000011718"
/db_xref="taxon:9606"
/mol_type="mRNA"
/note="cloning vector: pME18SFL3"
/organism="Homo sapiens"
/tissue_type="brain"
CDS 440..2710
/codon_start=1
/note="highly similar to Rattus norvegicus SH2-B PH
domain containing signaling mediator 1 (Sh2bpsm1),
transcript variant 1, mRNA"
/protein_id="BAG51467.1"
/translation="MNGAPSPEDGASPSSPPLPPPPPPSWREFCESHARAAALDFARR
FRLYLASHPQYAGPGAEAAFSRRFAELFLQHFEAEVARASGSLSPPILAPLSPGAEIS
PHDLSLESCRVGGPLAVLGPSRSSEDLAGPLPSSVSSSSTTSSKPKLKKRFSLRSVGR
SVRGSVRGILQWRGTVDPPSSAGPLETSSGPPVLGGNSNSNSSGGAGTVGRGLVSDGT
SPGERWTHRFERLRLSRGGGALKDGAGMVQREELLSFMGAEEAAPDPAGVGRGGGVAG
PPSGGGGQPQWQKCRLLLRSEGEGGGGSRLEFFVPPKASRPRLSIPCSSITDVRTTTA
LEMPDRENTFVVKVEGPSEYIMETVDAQHVKAWVSDIQECLSPGPCPATSPRPMTLPL
APGTSFLTRENTDSLELSCLNHSESLPSQDLLLGPSESNDRLSQGAYGGLSDRPSASI
SPSSASIAASHFDSMELLPPELPPRIPIEEGPPAGTVHPLSAPYPPLDTPETATGSFL
FQGEPEGGEGDQPLSGYPWFHGMLSRLKAAQLVLTGGTGSHGVFLVRQSETRRGEYVL
TFNFQGKAKHLRLSLNEEGQCRVQHLWFQSIFDMLEHFRVHPIPLESGGSSDVVLVSY
VPSSQRQQEPTTSHDPPQPPEPPSWTDPPQPGAEEASRAPEVAAAAAAAAKERQEKEK
AGGGGVPEELVPVVELVPVVELEEAIAPGSKAQGAGSGGDAGVPPMVQLQQSPLGGDG
EEGGHPRAINNQYSFV"
BASE COUNT 544 a 1010 c 939 g 602 t
ORIGIN
1 gggctccggg aggcagctgc ggctccgact gctcaggaac ctcctcctgg gcccggcaga
61 gagagacccc gagtcccccg gagtccgact cgctacgcgg gtcttgcgag atatctggcc
121 gcctctgccg cagctggagc agagatgggg tttcaccgtg ttggccggga tggtcttgat
181 ctcctgacct catgatccgc ctgtctcggc ctcccaaggt gctgggatta caggcgtgag
241 ccactgtgcc cggccttgaa cattcttagg tgcaactgga gaaggcactg aagccctacg
301 agattcacac cgtcttcggt ctcctggggt cggcgccgag tgggaggatg gcggaactgc
361 tgccgcccac ccctcgtctt ctggctgcct ccctctttgt gccccacagg ctccccctct
421 ccacctcctg gggcccatca tgaatggtgc cccttcccca gaggacgggg cctccccctc
481 gtctcccccg ctgcccccac ccccgccccc tagttggcgg gagttctgtg agtcccacgc
541 ccgggctgcg gctctggact ttgcccgccg ttttcgcctc tacctggcct cccaccccca
601 atatgcgggg cccggggccg aggctgcctt ctcccgccgt tttgctgagc tcttcctgca
661 gcactttgaa gccgaggtgg cccgggcctc tggctccctg tcgccaccca tcctggctcc
721 cctgagccct ggtgcggaga tttcgccaca tgacctgtcc cttgagagct gcagggtggg
781 tgggcccctg gctgtgctgg gcccttctcg atcatctgag gacctggccg gccccctccc
841 ttcctcagtc tcttcctcct ctacaacctc ctccaagccg aagctcaaga agcgcttttc
901 cctgcgttca gtgggtcgct ctgtccgagg ctcagtccgt ggcatcctgc agtggcgggg
961 gaccgttgac cctccctcct ccgctgggcc cctggagacc tcgtcaggcc ccccagtctt
1021 aggtggaaac agcaactcca actcctctgg cggggctggg accgttggta ggggactggt
1081 cagtgatgga acgtcccctg gggaaagatg gactcaccgt tttgagaggc tgagactcag
1141 tcggggaggg ggcgccttga aggatggagc agggatggtg cagagggaag agctgctgag
1201 tttcatgggg gctgaggagg cagcccctga cccagccgga gtgggccggg gaggaggggt
1261 ggctgggcct ccttcagggg gaggagggca gcctcagtgg cagaagtgtc gcctgctgct
1321 tcgaagtgaa ggagaaggag gaggaggaag tcgcctggag ttctttgtac cacccaaggc
1381 ctctcggccc cgactcagca tcccctgctc ttctatcaca gacgtccgga caaccacagc
1441 cctggagatg cctgaccggg agaacacgtt tgtggttaag gtggaaggtc catccgagta
1501 tatcatggag acagtggatg cccagcatgt gaaggcctgg gtgtctgaca tccaagaatg
1561 cctgagccca ggaccctgcc ctgctaccag tccccgcccc atgaccctcc ctctggcccc
1621 tgggacctca ttccttacaa gggagaacac agacagcctg gagctgtcct gcctgaatca
1681 ctcggagagt ctacccagcc aggacctgct gcttggaccc agcgagagca atgaccgcct
1741 gtcgcagggg gcatatgggg gcctctcaga ccgcccctcg gcatccatct cccccagctc
1801 tgcctccatt gccgcctccc attttgactc gatggaactg cttcccccag agttgccccc
1861 ccgcatcccc attgaagagg gacccccagc agggacagtt catcccctct cagcccccta
1921 ccctcccttg gacactccgg aaacagccac agggtccttc ctgttccagg gggagccaga
1981 gggcggtgag ggggaccagc ccctctcagg gtatccttgg ttccacggga tgctctctcg
2041 gctcaaggct gcacagttgg tgctgactgg cggcactggc tcccacggtg tcttcctggt
2101 gcgccagagt gagacaaggc ggggtgaata cgtcctcacc ttcaacttcc agggcaaggc
2161 caagcacctg cgtttgtcgc tgaacgagga gggtcagtgc cgggtccagc acctgtggtt
2221 ccagtccatt ttcgatatgc tcgagcactt ccgggtgcac cccatccctt tggagtcggg
2281 aggctccagt gatgttgtcc ttgtcagcta tgtcccatcc tcccagcgac agcaggaacc
2341 gaccacctcc catgacccac cccagccccc tgaaccccct tcatggacag atcccccaca
2401 gcctggggca gaagaggcgt cgagggcgcc agaagtggcg gcagcagcag ccgcagcagc
2461 caaagagagg caagagaaag agaaagcggg cggtggaggg gtcccggaag agctggtccc
2521 cgtggttgag ctggtccccg tggttgaatt ggaagaggcc atagccccag gctcaaaggc
2581 ccagggcgct gggtctggtg gggacgcggg ggtgccccca atggtgcagc tgcagcagtc
2641 accactaggg ggtgatggag aggaaggggg ccaccccagg gccattaaca accagtactc
2701 cttcgtgtga gccaacccca cccgctccac cctttttaaa ccccccagcc ctgctcgtga
2761 gattgggctg ggtagggaca gaggaggccg aaatccctcc cccatgcttc ctgacccttg
2821 ttggccaagg gcatctttga tggtacaagc agaggctcgg gagaggctcc cgtcacacac
2881 tacaggtccc ctccccaggg caggggattt gggctccatg agctccttga ggggctcttc
2941 tggtcagccc caccctgggg gccatttccc cattaactac ccccagcccg aggcagggtg
3001 agggggaagg gctgtcagtt acattaaggt ggttgttgtt gttgttttaa acaaaatgga
3061 gaagcataaa taaataaaaa ggtttatctc ggttc
//