LOCUS AK054502 2967 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
full-length enriched library, clone:E330033F11 product:SIMILAR TO
NUCLEAR VCP-LIKE homolog [Homo sapiens], full insert sequence.
ACCESSION AK054502
VERSION AK054502.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2967)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=E330033F11
FEATURES Location/Qualifiers
source 1..2967
/clone="E330033F11"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:E330033F11"
/db_xref="MGI:2426714"
/db_xref="taxon:10090"
/dev_stage="2 days pregnant adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="female"
/strain="C57BL/6J"
/tissue_type="ovary"
CDS <1..2097
/codon_start=1
/note="SIMILAR TO NUCLEAR VCP-LIKE homolog [Homo sapiens]
(SPTR|Q96EM7, evidence: FASTY, 90.8%ID, 98.4%length,
match=1947)"
/note="putative"
/note="start codon is not identified"
/protein_id="BAC35806.1"
/transl_table=1
/translation="SVPLKTPARESEGGWFIDKTPGGKKESLPLDLSDDQSNSKKQDS
EIQILKDSSLLESDKKRKGRAKGKGNKRKTENLQEVDGEIEALLQKKAKARSTELQIS
NVKFEDVGGNDATLKEVCKMLIHMRHPEVYQHLGVVPPRGVLLHGPPGCGKTLLAHAI
AGELDLPILKVAAPEIVSGVSGESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVA
SKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGI
PDEAARERILQTLCRKLRLPETFNFCHLAHLTPGFVGADLMALCREAAMCAVNRVLMK
QQAQQKKKPEIEGLPSEGDQEERLGAEPTSETQDELQRLLGLLRDQDPLSEEQMQGLC
IELNDFIVALAEVQPSAKREGFVTVPNVTWADIGALEDIRDELIMAILAPVRNPDQFR
TLGLGTPAGILLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQV
FQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAAT
NRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIAND
LRCNCYTGADLTALVREASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPSIS
IKDQVMYEALQRSLSQ"
BASE COUNT 870 a 634 c 718 g 745 t
ORIGIN
1 tccgtgccat tgaagacccc tgcccgagaa tctgagggag gatggtttat tgacaaaact
61 cccggtggaa agaaagaaag tcttcccttg gacctatcag atgaccaaag caactctaaa
121 aagcaggatt ctgagattca gattttaaaa gactcttctc ttttggaaag tgataagaaa
181 aggaaaggta gggcaaaggg caaaggaaac aaaagaaaaa cagagaatct tcaagaagta
241 gatggagaaa tagaagctct tctgcaaaag aaagccaaag caaggagtac agagttgcag
301 atttccaatg tgaagtttga agatgttgga ggcaatgatg caacattaaa agaagtctgc
361 aaaatgctca tacacatgcg ccatccagag gtataccagc accttggtgt cgtgccccct
421 cgtggagttc tcctgcatgg accaccaggc tgtgggaaga cattacttgc acacgcaata
481 gcaggggaac ttgacttgcc gattctgaaa gtggctgctc cagagattgt gtccggagtt
541 tctggagagt ctgagcagaa gctccgtgag ttatttgacc aggctgtgtc aaatgcacca
601 tgtattgttt tcattgatga aattgatgca attaccccca aaagagaagt tgcttcaaaa
661 gatatggaac gaagaattgt agcccagctt ctaacctgca tggatgatct gaataacgtg
721 gcagctacag ctcgggtcct agttattgga gctactaaca ggccagactc attggatcct
781 gctttgagac gtgcaggaag gtttgaccga gaagtctgct tgggtatccc agatgaggca
841 gccagagaaa gaattctcca aacgttgtgc cgaaaactga ggcttccgga aacttttaat
901 ttttgtcact tagcacacct aacaccaggc tttgttggtg ctgatctgat ggctctttgc
961 cgagaggcgg ccatgtgtgc ggtcaatagg gtcttgatga aacaacaggc gcagcagaag
1021 aaaaagcctg agattgaagg tttgccctct gaaggagacc aggaggaaag gctgggagct
1081 gagcccactt ctgaaacaca ggatgaattg caaaggctgt tggggttgct aagagaccaa
1141 gatcccctct cagaggaaca gatgcaagga ctgtgcattg aattgaacga tttcattgtt
1201 gctctagcag aagtccagcc ttctgccaaa agggaaggct ttgtaactgt ccctaatgtg
1261 acatgggctg atattggtgc cctggaagat attagagatg agcttataat ggcaatattg
1321 gcacctgttc gcaacccaga ccagttcaga actcttggtt tggggactcc agctggcatc
1381 ctcctagctg gtcctcctgg gtgtggaaaa actctgctag caaaggctgt ggcaaatgag
1441 tctggactaa attttatatc tgtcaaaggc cctgaattat tgaatatgta tgttggtgag
1501 agtgaacgtg ctgttcgaca agtttttcag cgagccaaga actcagcccc ctgcgtgata
1561 ttttttgatg aagtggatgc tttatgtcct cggagatcag accgagaaac aggtgctagt
1621 gttcgtgtgg tgaatcagct gcttacagag atggatggct tagaaacacg ccagcaagtt
1681 tttattttgg ctgccaccaa tagaccagat atcattgacc ctgccattct gcgcccaggc
1741 cgcctggaca aaacgctctt tgtgggtttg cctcccccag cagaccgtgt tgccatatta
1801 aagactatta caaaaaatgg caccaaacct ccactggatg aagatgtaaa tttggaaaca
1861 attgctaatg accttcgttg taattgctat acgggtgcgg acctcactgc tctggtacgg
1921 gaagcttctc tctgtgccct gagacaagaa ataacagctc agaagaatgg tgttggagca
1981 ggtgagctta aggtcagtca taagcacttt gaagacgctt tcaagaaagt aaaaccatcc
2041 atatcaataa aggatcaagt gatgtatgaa gctctgcaga ggtccctcag tcagtgatgt
2101 ttgcgctacc tggcatggag gaggtgtcta gtgtgtggaa ctcaccacga atcacagtta
2161 ctctggaggg tctactttca gcttgacacc aatgatcctt tttttttttt ttttaaatca
2221 gaaccagtta tctctttatt ttttggaaag taagttggct gtgttagtaa aaccacatct
2281 gctagtgtgg gctgataaac catgtgctag gccccaagaa ccctgagcca ctgtcctgac
2341 cctgctgact gacaggcaag ggacagccac ccaagcccaa taagaggagt aaaaaaagta
2401 gcaaaattgc attcaccact gtctcccagg ctttgaaagg tagcagtcta ggctataaaa
2461 gtctagaagc tctgcatagg gagtgttaag cctgcagcaa aacaacttgt aaaaactcaa
2521 taaattatag atagacttgt aacagatatc tattaacatc tgaaccttct tacaggatca
2581 gtccctcccc tgggcacagg ctcctgcctg gaatacatag caattagaat aatctgtatg
2641 aaaaatacca gttcaccttg aaatttttaa acatctccta aagaaagttc ctatataaat
2701 ctaatccctc acaaaagagg gccgaaggca acaggaaacg ctctctggcg ccattactaa
2761 ctaggagagc tagctgctca tgcgccaagg ggctatgtcc agcctggcag aggccagact
2821 cacggtctca gcaactccct aaatccagca tgaacctctt tcactgttaa taagttacaa
2881 cttaaaatgt ctgaaatacc ctgggactaa atgctgtacc ctgaggttgg ggactggagc
2941 tctgggagtt gataaatata gctttac
//