LOCUS AK052618 1663 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
library, clone:D630006C22 product:TGS1 homolog [Homo sapiens],
full insert sequence.
ACCESSION AK052618
VERSION AK052618.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1663)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D630006C22
FEATURES Location/Qualifiers
source 1..1663
/clone="D630006C22"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D630006C22"
/db_xref="MGI:2422289"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="kidney"
CDS 16..1524
/codon_start=1
/note="TGS1 homolog [Homo sapiens] (UniProt|Q8IWQ2,
evidence: FASTY, 91.5%ID, 98.8%length, match=1018)"
/note="putative"
/protein_id="BAC35065.1"
/transl_table=1
/translation="MAELDQLPDESSSAKALVSLKEGSLSNTWNEKYSSLQKTPVWKG
RNAGPAVEMPFRNSKRSRLFSDEDDRQINTKSPKRNQRVAMIPQKFTATMSTPDKKAS
QKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPKLKTRKLTR
VEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPL
PLVIGTKVTARLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEP
HETMPISAFGQKQRPSRFFMTPPRLHYTPPLQSPITDGDPLLGQSPWRSKVSGSDTET
LGGFPVEFLIQVTKLSKILMIKKEHIKKLREMNTEAEKLKSYSMPIGIEFQRRYATIV
LELEQLNKDLNKVLHKVQQYCYEVSGVYCFHWCFVLFCFVILVFFEMGSHSVAMAALE
TSLASSSEIRLFLPPSAGIKGVRHHAQPNVCCFPSMFCYLKLNDFTFTFCKL"
BASE COUNT 500 a 339 c 356 g 468 t
ORIGIN
1 ggcggctcgt tcaagatggc ggagctcgac cagttgcctg acgagagctc ttcagcaaaa
61 gcccttgtca gtttaaaaga gggaagttta tctaacacat ggaatgaaaa gtacagttct
121 ttacagaaaa ctcctgtttg gaaaggcagg aatgcgggcc ctgctgtaga aatgcctttc
181 agaaattcaa aaagaagtcg actcttttct gatgaagatg acagacaaat aaatacaaag
241 tcacctaaaa gaaaccagag agtggcaatg atcccacaga aatttacagc aacgatgtca
301 acaccagata agaaagcatc acagaagatt ggttttcgat tacggaacct actcaagctt
361 cccaaagcac ataagtggtg catatatgag tggttctact caaacataga caagccactt
421 tttgaaggag ataatgactt ttgtgtatgc ctaaaggaat cctttcctaa attgaaaaca
481 agaaaattaa caagagtaga atggggaaaa atcaggagac tgatgggaaa acctcggaga
541 tgttcttctg cattttttga ggaagagaga tcagccttaa aacagaagcg gcagaaaatc
601 aggctgttac aacaaaggaa agttgcagat gtttcacagt tcaaagatct ccccgatgaa
661 atccctctac ccctggttat tggaaccaaa gttacagcgc ggttacgtgg cattcacgat
721 ggcctgttta ctggtcagat agatgcagtg gacactctta atgctactta cagagtaact
781 ttcgatagga caggccttgg gactcacacc attcctgact atgaagttct tagtaatgag
841 cctcatgaga caatgccaat ctctgccttt ggacaaaaac agcggccttc tcggtttttt
901 atgacccccc cacggttaca ttatacccct cctctccagt caccaattac agatggcgat
961 cctttactgg ggcagtcacc ttggagaagt aaagtttctg gctctgacac ggagacgtta
1021 ggaggctttc cagtggaatt ccttatccag gtgactaagt tatcaaaaat tctcatgatt
1081 aaaaaagagc atataaagaa attaagggag atgaacacag aagcagaaaa gctgaaatcc
1141 tattccatgc ccattggcat tgagtttcag cggagatacg caacgatcgt cctggagctt
1201 gagcagctga acaaggacct gaacaaagtt ctgcataaag ttcagcagta ttgctatgag
1261 gtgagtggcg tatattgctt tcactggtgt tttgttttgt tttgttttgt tattttggtt
1321 ttttttgaga tggggtctca ctctgtagct atggctgctc tggagaccag cctggcctcc
1381 agctcagaaa tccgcctgtt tctgcctcct agtgctggga ttaaaggtgt gcgccaccat
1441 gcacagccta atgtgtgttg ctttccctcc atgttttgtt atttgaagct taatgatttt
1501 accttcacct tttgtaagct ctaagttaaa ccagtatctt taaaaggttt tttatcagga
1561 ctgcaatttg catatgtatt tgctcacatc agtattaaga gtattttaca cacagtaaat
1621 tatcaatttt caattactaa cttacaaatg atattgttct acc
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