LOCUS AK051286 2313 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN
full-length enriched library, clone:D130028N13 product:thymidine
kinase 2, mitochondrial, full insert sequence.
ACCESSION AK051286
VERSION AK051286.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2313)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=D130028N13
FEATURES Location/Qualifiers
source 1..2313
/clone="D130028N13"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:D130028N13"
/db_xref="MGI:2419548"
/db_xref="taxon:10090"
/dev_stage="12 days embryo"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="spinal ganglion"
misc_feature 1..2313
/note="putative"
/note="thymidine kinase 2, mitochondrial (MGD|MGI:1913266
GB|NM_021028, evidence: BLASTN, 99%, match=1903)"
BASE COUNT 535 a 585 c 633 g 560 t
ORIGIN
1 ggcacatcag ccagggacta tgctgctgcg gtcgctgcgt agttgggctg cccggtccct
61 gcgtagcgtg ggcccgggga gctccgggag ccccgggagc ctcgattcgg gcgccgggcc
121 actgtgggca cctcgccgcg cctggcctcc ggataaagat agagaaaatg ataaggagaa
181 aaaagcagtg gtttgtattg agggcaatat tgcaagtggg aagacgacat gcctggagtt
241 cttctccaat acaacagacg tcgaggtgtt aatggagcct gtgctcaagt ggagaaatgt
301 ccatggccat aaccctctga gcctcatgta ccatgatgcc agccgatggg gcctcacact
361 gcagacgtac gtgcagctca ccatgctgga ccagcacacg cgccctcagt gggaagatgc
421 ccgaggttga ctacgcgatt ctgtctgagt ggtttgactg gatcgtcagg aacattgatg
481 tctctgttga tctgatagtt tatctgcgaa ccactcccga aatctgctac cagagattaa
541 agatgaggtg ccgggaagag gagaaagtca ttccgatgga atacctccat gctattcacc
601 gcctctacga ggagtggctg gtcaacggga gcctcttccc agctgcagcc cctgttctgg
661 tgattgaggc tgaccacaac ttggagaaaa tgttagaact ctttgaacaa aaccgggccc
721 ggatattaac tccagagaac tggaagcatg gaccctagga ctgagtgatc tacaagacag
781 cgccaggaac agcccagcca gggccaggtt agctgctagg agcatttgga agaatctact
841 cttaggaggg tctgttatct aatcagatct attttctcaa tggtcttttc actgcagtac
901 aaatggcttt tgtctgtcag atgcttgcag catacatccc tcctggtgcc cctcctggtg
961 gcttcctaac gatgaagccc tgtgttaaaa tcactgactg tatccctggg gttgttctgg
1021 atcctctgca tcaggtcacc tcatgggtga gggagcagtc ttccacccca ggcaaggatt
1081 tgaagcccag aggggtgtgg ggactcgtca agccagagca ttgtggaggg agctgggacc
1141 attcagatac ctggtttggg ctgcctcctc ctaagctgtt ccccaccgcc ctgctgctct
1201 gagcaccagc ccccgcctct gtgagaagag tggacagttt gtgaattcca tcatctttca
1261 gtaccgggcc agttcaagga gaccagacat cactaggtgt tggcacacct ctcttatttg
1321 gcatgagccc agggtgtcct ggtatgaggg tactgtgacc tctatccatt cctttgtcac
1381 ctggacctcg gtgtccactg gggattcctg gatcggcctc tgcttggtgc cagagtcctt
1441 gaggatgagt cctccccaga ctctaccagt tccctgtcgt tttgtgtcag aaaaaagggg
1501 gttatgggac ctggacactt taccctttgc tgagcgaggc caagggcagc cagctgagct
1561 tccaagaccc catcactctc tcctgtcctt gtgtgaggag cagtgtcccc ttgctccagg
1621 gagagtgaca gtggccttaa ctcctttgaa gtgtttttcc atctgagcag atgtcatgga
1681 ccacgagcat gaagaagtca tctctattgg atcagaaaat accttagctt tgctgagccg
1741 taactgtgca ctgaaggtgc agctgttact tgaatcagtc atgaccaaga gaggccggcc
1801 attcctcagg accgtgagac tggaaagtca tggtttgcca acaaagacaa tttaagcctt
1861 gctgctcttg acattctaga atggatggag tgcatctgga aaagactgga cacagatgat
1921 acaggggaat gatgaccgta taccctggag aagcacagca caggctgggg agggggctgc
1981 aggggagccc tgctcccctg tttagctgcc tgggagctag aaagagggcc aagagtccag
2041 ctcttggtcc tttctgtttg gaccaattct tggccctttt ggtagtatga agagtagcat
2101 ccagggagat tgtccatcag cacctgcagt ccagcaatgg ataaacctga gaaaggcagg
2161 aactttgaac cagcagtact catgggggca tctttagaat ttgcaaacga acagtctagt
2221 acttgccctt tgctctacca gaacacttgt tttggggaga aatgtgctgt ttctctttct
2281 ctctagtagc caataaaatt ctacagctaa acc
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