LOCUS AK050506 4595 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult pancreas islet cells cDNA, RIKEN full-length
enriched library, clone:C820005F14
product:1D-myo-inositol-trisphosphate 3-kinase (EC 2.7.1.127) B
homolog [Rattus norvegicus], full insert sequence.
ACCESSION AK050506
VERSION AK050506.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 4595)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=C820005F14
FEATURES Location/Qualifiers
source 1..4595
/cell_type="islet cells"
/clone="C820005F14"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:C820005F14"
/db_xref="MGI:2418225"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="pancreas"
misc_feature 1..4595
/note="1D-myo-inositol-trisphosphate 3-kinase (EC
2.7.1.127) B homolog [Rattus norvegicus] (PIR|S41053,
evidence: FASTY, 90.8%ID, 16.7%length, match=361)"
/note="putative"
BASE COUNT 1198 a 1047 c 1090 g 1260 t
ORIGIN
1 gagtcgaagg ggacttgggg aagccagctg ccagacggag atgctcaccc tagctgccaa
61 gagatgcccc cagaccagaa ggacaaggcc tccttaaaag aggcctgcag ccccagcaac
121 atcccagcca tccctgcagt catcattaca gatatgggtg ctcaggagga tggagggcta
181 gaggagatcc aaggaagccc tcggggtccc ctgcctctga ggaagctgtc ctcctcctca
241 gcctcctcca ctggcttctc ctcttcttac gatgactcgg aggaggacat ctccagtgac
301 cctgagcgca cgctggaccc caactcagcc tttttgcata gccctggacc agcagaagcc
361 cagagtggta agtgttgcct cgcaagcaga ccttggatgc tccgtgcatc atcctggttt
421 tcttactttt ttgctgagcg ggaaagaccc tgagcagggc tctggtaaag tcataatatc
481 tctctatagg tggttttgtt gtgggcatgg tctaccaagc actctgaaga ctgggcagtg
541 agtttaagtt gttcttacgg tacatgtctt taaaaaatgg gtctgaagga acgtaaggtt
601 cgtgtatgtc aactataata aaccttccta atttctaaag ctggtgagca gagatgcgtt
661 gctttgactt gatggagtga aacacttcat ttcatggttt attcaggctg acaaagatat
721 ctattggctt aactcagcct ctactcctag gcaggaatgt gagtggtatg atcctgtgac
781 aggcccctga cctctgcaga tgtggttgta tggctgatct acggtttgag caactattga
841 gattcacacg taagttaggc agcagttggc tgtatcagtg tcagtcaacg taactaatat
901 gcagtgtgac gtgcgagata aatggaaaag tatcgtttga gccaagtaga tcctttcttt
961 tgtagcttca tttgacttga gttgtctgag ttaggcacat ggtgtctcct taagagtgta
1021 agttgggaca ggtccatttc tggtacatgt ctacatgtat gttcattaca ctaatgcttg
1081 gtctgtttga ggcagtggca gatgctcgtt cctactgtgt ggttgatctc atttttgagc
1141 tgaggtcagt ctctttcaga aggtaattgt tgaagctagc tcttctaaaa tgggatggcc
1201 tttctcttgc ctctccatgg aggatgggga gtttccttac ctggcatgca agaggttgta
1261 gggcttcctt gtggggaaag caacatggta ttttagtggg tagccttctg gtttcatctt
1321 gaatgtgaga ttccacccat ttgtacccca ataactttct ccatccttcc tggctgtatt
1381 acagttccac tcaacactaa gaaattttgg actctaaaac acagtccttt ccagcttcca
1441 tttcagaaaa catggtctag ttttgaagag cagcaatctc tttctctgtt ttctgctggt
1501 agtctagaaa gacaaatgtg tttgcaaaca ggagtcctaa tcagtcattt gggggccagg
1561 acagggctcc aggcaccttg cacctgctgc cagtattatc acctttagaa aaagggcaga
1621 cgggcaggcg ggcagtctgc ctcaggggac agtggtcaca gggcagctgg gaaatgcatc
1681 tttttaaagg tgaggctcaa tttctctgcc ctctgcccag cagttactcg taagtaagag
1741 agggtcttct ctccatttgt ttttgaaacc ccaaagctgg gctggcacac ccaaatagct
1801 ctgagttgtt atgcagtttc cacttgccct ttctgtggtg gctgaacagc tcctgctgac
1861 tgcttgccaa aacagcccat acatgcacgt ttgaaaacaa agtcttgttt gggagtgagt
1921 taaaggggag ttaaataata acaagtaaca ggtaaactgg ttttgttgtt gttgtcgttg
1981 ttcttcattt gtaagattaa aagcagataa gtaaccaggg aggaactggt aagagaggct
2041 cagaggtgag acgctgttcg ctccacctcc cgcctttgaa caggttcttt tagacaccca
2101 caaagtggag ttagggagaa agacaccact agcctgcttt gctctctgaa gcatgtgaaa
2161 cacacacaca cacacacaca cacacacaca cacacacaga gagagagaga gagagagaga
2221 gagagagaga gaaagacaca gagagaggca gagagacaga gagacagaga atatgtgtgc
2281 acgtgtgcgc gtgcgcatta gagtcagatg agtgtgggta atcaactgga aattatggaa
2341 tcctagggac ttttgcgctt tggttgagag cttgcactat gagcagaggt ctctttttag
2401 gctaatcatg atggtggagc ttatctggca aactgtctgc tcattgggtc aaaaaaaata
2461 actcatcccc cgagactgct attttgtctg cagaaggcca gacatcttga tggacctggg
2521 aggcctgtgg gctgcccgtt tgatgtttag tagatgaagt ctaaagtgtc cctgcctgtg
2581 cttctctaaa cccttctgca ttctcctcgg actcgcttct gtgtgtacgg caccactgca
2641 cgacctctga gcacgttccc acttgcccac ttcgcctcac actcatgctc gccctcgcct
2701 tcgcattgct cgtacacact aacacgtgcc tacacatgct cacactcaac tcctgcctgc
2761 cccctcacac ccattcactc aaacacgtag gttggaaatg gcatgttcac acaaccaacc
2821 cgggcctctg agccaaacta gaccctgagg atttttactg ctgccccgcc ttcccaagtg
2881 cccactacgg cacactgccc cacactgccc catactgcct catgcctgat tgggtgtaca
2941 ggcagaatgt gacagcatat ctacgtcttc aggatcagac acttgggatt tgcttggaag
3001 gaacaatcgt gcatccttct gcagcagctt aaattctggt ccactcacac ttcctgttcc
3061 ctgagctctg aacagaacca aatggcactg agcaaggatg gtgccccctt tctactttcc
3121 ccattgcaga aagcatttat ttcttatcct cctagatcat tctattcaag agcctggggc
3181 attaagattc caggtagaga gtatgacatt acaacgcaga agcctcttaa cttataaaat
3241 agattggatt ggtttgttcc aaaaatctac tatcaataat gtgtatgtac aaaaaatgga
3301 acaagggtcc agaaagatgg atcagcaggt aaagatgctt gctaccaggc tgaagaccag
3361 agtttgatac ccagaaccta aatggtagaa ggagggaact ggttctagca agtcatctat
3421 ggcatgcgca cctatctacc taccctcccc cacatataca tacacatgca caaacacatg
3481 catgcatgta tgcatgcaaa aattcataaa ataaaatgta aaaaaaagta tattaaaaac
3541 ttcaaaacag tgctctaata cctgtagagt atataaggaa gtagactatc agagagcctc
3601 tgcctcctag tctttactac ttttaaggga cactggaatt ttgtttcttt ggactttatt
3661 gtgtgtctgt gggagggggt gttattgagc agttttgctt cttttcagtg aagaatgaat
3721 ttgtaaacat agcacaattt aacctgtttg agatgattgt gtgtgtgtgt gtggtgattt
3781 tatgtttgat tatctaatag tgagcacttt taagtggaca ctttaaaagg cttatttata
3841 tatgtgtgtg tgtgtgtaaa cacaagtgtg tggaaatgct tctagaggtc agggcatgtg
3901 tgggatccct ggagcgactg tgagttgcct gatttgggga ttgagaaaag aactccaggt
3961 ctgcagaaac cccaagtgct cctacctgct gaggcatcgc tccagcctct ggaaacttta
4021 gatgaggatg ctgaaggttc agattgtggg gctcagatgg cactttctgt ttcccaaaga
4081 tgggggggcc cacctgtctg tctgtctgtc tgtctctctt ggacacaggg gattctagat
4141 ctaggggccc tggagtcatt tatctgagat cctgggaatt aatctgacaa aaataaaaca
4201 acaacaataa caaccacaac aacaacaaca aaaaaaccct aagattcaaa aagcaacagg
4261 acctgggaca cacacggaaa ggccctgact ctctggcacc gttttctctt tctccattgt
4321 gcgtaatatg agggtgattc aagggggtcc acctcacccc aactttctgc aaatacttaa
4381 ttttagatac ccacagctct atacttggtg ggtgtgaagc atgtgtaaac atgtttggcg
4441 atgtgacaag gatcctttga catgggccat gacattaagg tccaaaccag gcacctttaa
4501 atgtgtgctt ttattgaagc ctgttgactg atggtcctgt ctctctttct ccctttacca
4561 gaagataggc tctttgtaac ttcacattga aaagg
//