LOCUS AK050330 1952 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male liver tumor cDNA, RIKEN full-length
enriched library, clone:C730037M13 product:unclassifiable, full
insert sequence.
ACCESSION AK050330
VERSION AK050330.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1952)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=C730037M13
FEATURES Location/Qualifiers
source 1..1952
/cell_type="tumor"
/clone="C730037M13"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:C730037M13"
/db_xref="MGI:2418052"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="liver"
misc_feature 1..1952
/note="putative"
/note="unclassifiable"
BASE COUNT 578 a 349 c 345 g 680 t
ORIGIN
1 tatggcagca atccccagat gatgtgacag cgtagtggct ttatttcctt agcttctgct
61 tttaatagaa tcttataaaa gatttgagtt tgatgttcaa aaaatttttt tgccaagagt
121 gttttcatgt ttaattatgc tttttgtttc ttgcgtttat tggaattaca catagaaaag
181 tagagttgta attttcaaac tccatagtgg tttttttttt caaaaatcag aatgttattg
241 taaatgatat agttggattt tttttaatat tcccactcaa taccatttca aaatactact
301 gctgtgtagt tacttagttt ctttaaaaag aaaaataatt agatttttta atgaaattga
361 gttttagttt aagagcatat agctctaaat gcacagatag tgatttttgc tgttctattt
421 tattgtaggt aacactagtt ggtctttcta cagtattact gtagttttca atatagcctg
481 ggtttacttg ttgcagctaa gaaaataatt tttatttcct catttttgtt ctctttcatt
541 gacactaatt agtgaaaact agttaagaag aaacaacaaa ttaatacatg gcagaaattc
601 ttcaaaagaa aaagatttct attaaagggt tcaagaattc tgaagtcagc aatcacaaat
661 taaactgata gtgagtcttt ttctttctct agtggcttac tcactgccat gtcatatctt
721 tatgggacca taaaacatgc tgataaatgt tttaacacct gactctggtc aataaactgc
781 taaataaact gccagttttg tgatagaaac tcttgttcac ccacagccga gaaggtggtg
841 cggctgcatg ctttaactct ggtgctggac actggacact gtgctcacct ctgctagctc
901 acggtcccac tactcaagga gtaggcttgc tctaaaatgt gggtcagtat tagtgaaaac
961 acaagctatc tgcccttgac tgtagacata ttgaagccac aagacttaga ggtcaaagtc
1021 attggaacta tttattccta ttcacagaat taccttggat ccagggttta ttgtcttact
1081 gttgagtatt agggcttcag gatctcatga tagctcaaaa aaaaaaaaaa aaaaagaact
1141 tattcttaaa atagcgcagt tttcgatgtg taacaaatct tccacttgga cactcttatg
1201 actgagtcat tttaggttct tattgtaaaa catttcagag ctgcttcatt accttgcaat
1261 ttatataatt aaatagacaa aagaataaag agaatgtagg aagtgagaaa cattcctgtt
1321 ttatatagct aaatataatt ttattacctt cttcttagct gtccccaaat aaagttgtga
1381 gtggggcaaa tttgtcttga gatcatttga ttcttttatt tttctcttcc tgttcacagt
1441 ttactgtcaa aaaacataac ttggcctcca tgattcttat tgctctgaat gtttctgtca
1501 tggcagcacc ttggtagacc atagaggact ggccgtgcag tgaagagttg gattcaggcc
1561 taactcgaaa cttctcaaag cataccagtt tatgggatca tctgtgccac acatacagag
1621 ctggtagctg gtatcccgca gcagttccag tttttaaacc taaacatgaa agacttacat
1681 tgattagtaa ctaactgtgc tggttatttt caccaagccc ttcattcatg gactgtttga
1741 acggtggtct gtgcccacca ccctcagagg ccgtggtggg tatacccaca gagggcagct
1801 ccttgtgttt accattccat ctttaactcc tgcagattta ccagatgata atgattctcc
1861 acattgacca aaaggtggca gttttatatg agcaacatat cacaactcca gaacagtttt
1921 tattcttgtt tcatttctat ttgtgtgatt tc
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