LOCUS AK046397 616 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length enriched library, clone:B230379O18 product:1700001C14RIK PROTEIN (CHEMOKINE-LIKE FACTOR 2), full insert sequence. ACCESSION AK046397 VERSION AK046397.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 616) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=B230379O18 FEATURES Location/Qualifiers source 1..616 /clone="B230379O18" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:B230379O18" /db_xref="MGI:2411801" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="corpora quadrigemina" CDS 110..568 /codon_start=1 /note="1700001C14RIK PROTEIN (CHEMOKINE-LIKE FACTOR 2) (SPTR|Q9DAS1, evidence: FASTY, 100%ID, 100%length, match=456)" /note="putative" /protein_id="BAC32704.1" /transl_table=1 /translation="METPRPVVSRRPFCCTLKCFVKFLRLVVTVTSMIFFIVGQAPEP YIVITGFEVTVIFCFLVLYTCGLDKIMRSFFWPLLDVINSMVTALCMLIVSVLALIPE TSTKTILGGVFGFLTVTCTIADCALMCQKLRFRPRQPYQKKSTNDIDDRE" regulatory 593..598 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 616 /note="putative" BASE COUNT 148 a 132 c 144 g 192 t ORIGIN 1 ggtgccgcag gcccagcccc ggcagttgag ctggtggcgc gagtcctgga aagagccatt 61 aatcgagaag gcttgaaaga gaggcgtgac tgttgggtct gtgggcaaga tggagactcc 121 acggccggtc gtaagccgtc ggcccttctg ctgtactctg aaatgctttg tgaagttcct 181 gcggttggtg gtaactgtga catctatgat ctttttcatc gtgggacaag cccctgaacc 241 atatatcgtc atcactgggt ttgaagtcac cgttattttc tgtttcctag tcttatacac 301 gtgtggactt gacaagataa tgagatcttt cttttggcct ttgcttgatg ttattaactc 361 aatggtaaca gcattatgca tgctcattgt gtctgtgttg gctctaatac cagaaacctc 421 aacaaagaca atccttggag gggtgtttgg tttcctgaca gtaacatgta ctattgccga 481 ctgtgccctt atgtgccaga aacttcggtt tcgtccacgt caaccttatc agaaaaagtc 541 tactaatgac atcgatgaca gagaataatt ttgtacttat tttttactac ttattaaact 601 aattatttat acatcc //