LOCUS AK044466 2447 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult retina cDNA, RIKEN full-length enriched library, clone:A930014J19 product:hypothetical protein, full insert sequence. ACCESSION AK044466 VERSION AK044466.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2447) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A930014J19 FEATURES Location/Qualifiers source 1..2447 /clone="A930014J19" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A930014J19" /db_xref="MGI:2409779" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="retina" misc_feature 1..2447 /note="hypothetical protein (evidence: CDS)" /note="putative" BASE COUNT 797 a 406 c 496 g 748 t ORIGIN 1 gacacgagca acagatatgc cctggaaaat gcgtcgtttt gcaaaactgg acatgtcggc 61 tagactagag ttgcagtctg ctctggatgc agaaataaga gctaagcagg ccatccagga 121 agagctgaat aaagtcaaag catctaacat cttaacagaa tgtaaactga aagattcaga 181 gaagaagaac ttggaactgt tgtccgaaat cgagcagctg ataaaggaca ctgaagagct 241 tagatctgaa aagggtatga gattgtgtgt ttgcatcagc gcttgctgta ctgagtggcc 301 attactgcag aggagccagc ttactgcaca gatggagaag tctatacgtt agcaaccaca 361 catgtgcaca cccttgagag ttcatacaca catgcacaca cactcaaatg cgtatataca 421 cgtgcataga ctggctgaga tattaggtat tagttaatat acattatatt aagaatttta 481 aattacagaa atgactgctt tgccatgaat ttgactgttt tttcagtgtt aaaatatact 541 tcatgagtaa cttttgagtt gggataaaag tattttgtga tgtatttata atgttctcac 601 atatcatatg aggtagacac ttcaacagtg gtaacattag aacttagtgt agaaacttga 661 aaagggagaa gttgatttgg gggcagagtc tggttgaata gcccatggtg ttcttgattt 721 aagaatcctc ttgcccactt ccccagagtg ctaggattgc atttattagc actgtctatg 781 gacctacagt atacaaaatc ttatgggtat aggaaaaaca atcagggaaa caatataaaa 841 ctcaagatta attattttac taatgaagaa tttttgggtg tttgttgtct ttttccaggt 901 tggctgatgc ttacattgtt tgtccttttt gatttaccag atttaatagt attttttttg 961 agaacttttg ttcttctttt tacatgtacc tagctcagcg catgtcataa ctctatgata 1021 taaacctctt atacaatttt tccataatgt ggacattata agggtgatga tttagtaaaa 1081 ataaactcag aatgtgactt attttagtaa aggcatttta catagaatta ccaaaaatcc 1141 atttttctgc caatggccat catcaattac tggattaata tatgggcttt gtttttagct 1201 gagagttttc ttattatttt ccatacccac aacacagaga gggttgggtc tggttgggtc 1261 tttaatgcca gcttatacta gggagaacaa acgagccaca taaaagcact aaattactgt 1321 atggcacctt ttttcaatga ttgaattttt tattttaaga tttatttatt ttatgtattc 1381 accattgctg tcttcagaca caccagaaat gggcatcaga ccccattgta gatggtcgtg 1441 agccaccatg tggttgctgc gaattgaact caggacctct ggaagagcag tcagtgctct 1501 taaccactga gccatctctc cagcccattg attgaatttc ttaatggcaa aagtgtataa 1561 gaactaacaa ttccaggata agccatcctg ctaaatgatc atgcttgatt ttaattcata 1621 cacagcagag aagtatatta aggaagaaaa acaatatgta atataggtgc ctgtagtcct 1681 aaaagcagtt taaccagaat gacacctgtg ccaaataaaa gcaacagatc aaattgactg 1741 cattattttt atattatatc caaacttaaa agactttgaa gttcctggca catgaaagca 1801 cattaaacaa agcatttctt atttagaata ttgcaaaatg tcattatgtt acagcatgat 1861 atattgtgct atataactga gtttacaaaa tgagggcaaa atccttttct atattttatt 1921 tactatttta ttcccaatat ctagaaaagt atctgctaca tttgtgtgta tgtgtggaga 1981 gagagagtga cagagagaga gagacagaga gacagagaga gagacagaga cagagagaca 2041 gagaaagaga gagaaacaga gagagacaga gagtggtggg ggagatggtg catgccttgg 2101 catccataca gaggatagaa aacaaccttc agaatttagt tttctcacct gtgggtctta 2161 gagattgaac ttaggtcttt aggcttggcg caagagcctt tagctgctga gccatctcag 2221 ctgttcataa taggctcata ataaatattt gttgattaaa tattttcact gtctgttaga 2281 aaattatgat agaataatat taatattgag aagcacataa atcagtgatt gggagacaac 2341 tgtgtaaaat gcttactttg caagcatgag tgtctgattt cagattctga gtacctacat 2401 tcccatcacc caggagtgat acacctaaaa tcccagcact gagagag //