LOCUS       AK043986                1165 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 10 days neonate cortex cDNA, RIKEN full-length
            enriched library, clone:A830067N11 product:brain expressed,
            associated with Nedd4, full insert sequence.
ACCESSION   AK043986
VERSION     AK043986.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 1165)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A830067N11
FEATURES             Location/Qualifiers
     source          1..1165
                     /clone="A830067N11"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:A830067N11"
                     /db_xref="MGI:2409273"
                     /db_xref="taxon:10090"
                     /dev_stage="10 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="C57BL/6J"
                     /tissue_type="cortex"
     misc_feature    1..1165
                     /note="brain expressed, associated with Nedd4
                     (MGD|MGI:1929597 GB|AF240460, evidence: BLASTN, 99%,
                     match=1164)"
                     /note="putative"
BASE COUNT          326 a          301 c          284 g          254 t
ORIGIN      
        1 agacaggccc ttgggcctgt atcgtggagg aacaacacag ttcttctaat gtctgtgcca
       61 ggattgagag ctcaagagaa acaaggtgtg ggcagcccca tacacacata atgcttccta
      121 gacatcactc agaggaggca cagaagagtc cactgctcag taagtgccca gccagctctg
      181 gtgacctggg tgtaagaggt ctcagaccaa ccaaagagcc agcgctgtca tccagggtgg
      241 taactcccag ctggggactg ggctgatgaa gtctggcctt gcctctctgg gatatacaca
      301 gagacaacac acacacatgt accccacaaa aaaaaaaaaa aaaaaaaaag caaaaaaaaa
      361 acaaaaaaaa cttcatgtca ctatgagacc agtgtctgct gccaacatcc catcacggaa
      421 gcaggtgtgt ggaggcagcc agttggagat aggctcagat attagccttt gagctccagc
      481 gatgtgatct ccatcgaaga ctatataagg tgacgaggcc atctttgaag acccggcttg
      541 ccaaagctaa gcacctttga ggaggatcct gtcagcactg ccgctggcag ggagtgagac
      601 atcctgcctc ccggactcct accttctgac ggtcatccca gaagagcaga cccatcccca
      661 ctgaacccct tcccacattc aactcctcca atgaagggct aagaaaattc atcaatccct
      721 ttcctaagca gaggggtagc aaggattttt attttctata gagaaagcat ttattctgat
      781 gcagagccga aagggcccaa ccaccagttc tgtagcatct aggcggcagc ggctgcaggc
      841 tgcgggcagc accctagagt cccaggcctg ggggagggag ccttgtttac aagccctttt
      901 gcccaccttt gtggcgttct gctttctagg caaagatgtc tgtctgtggt actgtccagc
      961 ctttaaaaca caccccgggg atgagactct ttttaagaaa ggcagtctgt ttctagagct
     1021 ctggaaagtg gtgggggcag aaaaacatcc ccgcctattc accacgtcgg agggatctgc
     1081 ggaacagctt ttctcctacc taggttaggc tgaataagca gcaatgtatc ttttctgtac
     1141 tcaaaataaa tgctcattat caacg
//