LOCUS AK043986 1165 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 10 days neonate cortex cDNA, RIKEN full-length enriched library, clone:A830067N11 product:brain expressed, associated with Nedd4, full insert sequence. ACCESSION AK043986 VERSION AK043986.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1165) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A830067N11 FEATURES Location/Qualifiers source 1..1165 /clone="A830067N11" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A830067N11" /db_xref="MGI:2409273" /db_xref="taxon:10090" /dev_stage="10 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="cortex" misc_feature 1..1165 /note="brain expressed, associated with Nedd4 (MGD|MGI:1929597 GB|AF240460, evidence: BLASTN, 99%, match=1164)" /note="putative" BASE COUNT 326 a 301 c 284 g 254 t ORIGIN 1 agacaggccc ttgggcctgt atcgtggagg aacaacacag ttcttctaat gtctgtgcca 61 ggattgagag ctcaagagaa acaaggtgtg ggcagcccca tacacacata atgcttccta 121 gacatcactc agaggaggca cagaagagtc cactgctcag taagtgccca gccagctctg 181 gtgacctggg tgtaagaggt ctcagaccaa ccaaagagcc agcgctgtca tccagggtgg 241 taactcccag ctggggactg ggctgatgaa gtctggcctt gcctctctgg gatatacaca 301 gagacaacac acacacatgt accccacaaa aaaaaaaaaa aaaaaaaaag caaaaaaaaa 361 acaaaaaaaa cttcatgtca ctatgagacc agtgtctgct gccaacatcc catcacggaa 421 gcaggtgtgt ggaggcagcc agttggagat aggctcagat attagccttt gagctccagc 481 gatgtgatct ccatcgaaga ctatataagg tgacgaggcc atctttgaag acccggcttg 541 ccaaagctaa gcacctttga ggaggatcct gtcagcactg ccgctggcag ggagtgagac 601 atcctgcctc ccggactcct accttctgac ggtcatccca gaagagcaga cccatcccca 661 ctgaacccct tcccacattc aactcctcca atgaagggct aagaaaattc atcaatccct 721 ttcctaagca gaggggtagc aaggattttt attttctata gagaaagcat ttattctgat 781 gcagagccga aagggcccaa ccaccagttc tgtagcatct aggcggcagc ggctgcaggc 841 tgcgggcagc accctagagt cccaggcctg ggggagggag ccttgtttac aagccctttt 901 gcccaccttt gtggcgttct gctttctagg caaagatgtc tgtctgtggt actgtccagc 961 ctttaaaaca caccccgggg atgagactct ttttaagaaa ggcagtctgt ttctagagct 1021 ctggaaagtg gtgggggcag aaaaacatcc ccgcctattc accacgtcgg agggatctgc 1081 ggaacagctt ttctcctacc taggttaggc tgaataagca gcaatgtatc ttttctgtac 1141 tcaaaataaa tgctcattat caacg //