LOCUS AK043334 2584 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
enriched library, clone:A730086D15 product:unclassifiable, full
insert sequence.
ACCESSION AK043334
VERSION AK043334.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2584)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A730086D15
FEATURES Location/Qualifiers
source 1..2584
/clone="A730086D15"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A730086D15"
/db_xref="MGI:2408515"
/db_xref="taxon:10090"
/dev_stage="7 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="cerebellum"
misc_feature 1..2584
/note="putative"
/note="unclassifiable"
BASE COUNT 758 a 592 c 530 g 704 t
ORIGIN
1 gaaaacttaa gagctgggca acagtggctc aagcctttaa tctcagtact tgggaggcag
61 gccgatctct gtgagttcga ggccacccta atctacagag tgagttccag gacagccagg
121 gctatacaga gaaaccctgt ctcaaaaaaa caaaaaaaaa aaaaaaaaaa ataaagcaaa
181 acaaaactag ttttccccca tcctgggaat gtacactggc gctgacgtgc tagccatcac
241 tctgtcactg ggctataccc cagccctacg acgttgcctt ttctagcagg aagttatatc
301 tgtgtggttt cattcgagca tttgggaagt tcatatatag cctgacaggt cattcttccc
361 cactcactta acctgttttt tgacacatga cattatactg attcccttta tttctctggt
421 accatctacc ggatccccat ggggactgcc atgtgtggtg cagagacata cttgcagtca
481 agctacccat acacagaaga ataaaaatct aaaaaaaatt ttatcgtatg tgaagaatgc
541 ttatataact ctccattggt tagtgtgcaa ggaagtgctc atactttgtt cagtgagaag
601 ataagctact ggtctcctag aaggcgactc accaaagcac tggccagaaa cctacttctg
661 cattatctgt attacctatt actgtgagaa acatcacgac caaggtaact tacagaagga
721 gtttgtctgg gtttatggct ctgaaacagt aagagtccat cttggtggca ggagcaggaa
781 gctgagagct cacattctca accataatac aaggtagaca aagctggcta caagtgttac
841 ggcgtctcag agccaacctc ctgtcgagct cctaaacttt cccagcgagt tccaccaaat
901 atccaaacat ctgagcccgt ggaggacatt ctcattcaaa cgactacgtc tgctctcccc
961 acactcattg gcttgtgacc aaattaatac aaaatgaatt tagaccaaat tcaaaggtcc
1021 ttgtagcctt tcacagactc aacactgttt caaatccaac gtctcttgaa actcaagaca
1081 atctcttaat tataaacttc tgtcaaatca gaaagagaat tacatatttt ctatcagggc
1141 atagtgtgga aaactggatc acagcaagcc tggagcccag aggcaaaccc caaacccggg
1201 agctcacctc tgacgtcaga gggcgtttgc ttcctttacg ttttctgtgt ataaagtttc
1261 tactaaagga ataagtgggc gctagagaga gttgagtggc taagagtgca tactgccctt
1321 gcagagaatc tcaggtcagt tcctagtgct cacactgagt agcccactac aacctgtaac
1381 tccagcagtc ctgtacttct gacctccatg gacattggga tttattgtgt acatccacaa
1441 tctcacctaa cttaaaacaa tcaaataaaa aaaaaaagag tgagtagcag acattaggca
1501 ttcctaagag caagggcaaa ctccttgtaa tgttaacacc attatcaggt aagaacagta
1561 tcacagtata ggaaggtata atgacctgcc ggctatttta gatctctttt agattatgga
1621 aattgtattg ttaacaagac agaaccttat cagatctgtt ttttcatgtc agaaatccta
1681 ttccatgccc attggcattg agtttcagcg gagatacgca acgatcgtcc tggagcttga
1741 gcagctgaac aaggacctga acaaagttct gcataaagtt cagcagtatt gctatgagct
1801 tgcaccagac cagggactcc agcctgccga tcagccaaca gacatgagac ggaggtgtga
1861 ggaagaagcc caggaaatcg tccggcaagc caactctgct tccggacagc cctgtgtaga
1921 aaacgaaaat ctgacggact tgatctccag gctcactgcg attttattac aaattaagtg
1981 tctggcagag ggaggagacc tgaattcctt tgaattcaaa tctctcacag attcattaaa
2041 tgacataaaa aacacaatag atgcttctaa tatcaggtaa gtcataggta tgtgatgacg
2101 tgtaggaatt ctgcttattt gtacagtatt tgtgtatttt gtttatcctt taaatctatt
2161 tagacaagct tttcacttct agtcatcctg ttgacggaac agatgtgtta cataagctct
2221 gcatgaaggc gtcaggacat aagctctggg tttggtttac tgcagagcag tgaccctttc
2281 agtaccttca gtgccctggc acacctttgc tcctagcgtg cagctcggaa acagatctgc
2341 accttccctg aaggcttttt cttacctttt gttttggttt gtttgtttgt ttgttgttcg
2401 aggtgacagg gtctctctgt gtagcccagc tgtcctggaa ctcactctgt aaactggcct
2461 caaactcaca gagatcggcc tgcctcccaa gtactgagat taaaggcttg agccactgtt
2521 gcccagctct taagttttct aagaaatatc tattaactaa ttaaaattaa gtgccccagt
2581 cact
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