LOCUS AK042357 1048 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A630085A08 product:hypothetical protein,
full insert sequence.
ACCESSION AK042357
VERSION AK042357.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1048)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A630085A08
FEATURES Location/Qualifiers
source 1..1048
/clone="A630085A08"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A630085A08"
/db_xref="MGI:2407392"
/db_xref="taxon:10090"
/dev_stage="3 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 156..617
/codon_start=1
/note="hypothetical protein (evidence: ProCrest)"
/note="putative"
/protein_id="BAC31235.1"
/transl_table=1
/translation="MPFRNSKRSRLFSDEDDRQINTKSPKRNQRVAMIPQKFTATMST
PDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK
TRKLTRVEWGKIRRLMGKPRREISLKTEAAENQAVTTKESCRCFTVQRSPR"
BASE COUNT 342 a 225 c 225 g 256 t
ORIGIN
1 ggcggagctc gaccagttgc ctgacgagag ctcttcagca aaagcccttg ctcagtttaa
61 aagagggaag tttatctaac acatggaatg aaaagtacag ttctttacag aaaactcctg
121 tttggaaagg caggaatgcg ggccctgctg tagaaatgcc tttcagaaat tcaaaaagaa
181 gtcgactctt ttctgatgaa gatgacagac aaataaatac aaagtcacct aaaagaaacc
241 agagagtggc aatgatccca cagaaattta cagcaacgat gtcaacacca gataagaaag
301 catcacagaa gattggtttt cgattacgga acctactcaa gcttcccaaa gcacataagt
361 ggtgcatata tgagtggttc tactcaaaca tagacaagcc actttttgaa ggagataatg
421 acttttgtgt atgcctaaag gaatcctttc ctaatttgaa aacaagaaaa ttaacaagag
481 tagaatgggg aaaaatcagg agactgatgg gaaaacctcg gagagagatc agccttaaaa
541 cagaagcggc agaaaatcag gctgttacaa caaaggaaag ttgcagatgt ttcacagttc
601 aaagatctcc ccgatgaaat ccctctaccc ctggttattg gaaccaaagt tacagcgcgg
661 ttacgtggca ttcacgatgg cctgtttact ggtcagatag atgcagtgga cactcttaat
721 gctacttaca gagtaacttt cgataggaca ggccttggga ctcacaccat tcctgactat
781 gaagttctta gtaatgagcc tcatgagaca atgccaatct ctgcctttgg acaaaaacag
841 cggccttctc ggttttttat gaccccccca cggttacatt atacccctcc tctccagtca
901 ccaattacag atggcgatcc tttactgggg cagtcacctt ggagaagtaa agtttctggc
961 tctgacacgg agacgttagg aggctttcca gtggaattcc ttatccaggt gactaagtta
1021 tcaaaaattc tcatgattaa aaaagacc
//