LOCUS AK042354 3908 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 3 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A630084I08 product:forkhead box G1, full
insert sequence.
ACCESSION AK042354
VERSION AK042354.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3908)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A630084I08
FEATURES Location/Qualifiers
source 1..3908
/clone="A630084I08"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A630084I08"
/db_xref="MGI:2407388"
/db_xref="taxon:10090"
/dev_stage="3 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 55..1032
/codon_start=1
/note="forkhead box G1 (MGD|MGI:1347464 GB|NM_008241,
evidence: BLASTN, 100%, match=645)"
/note="putative"
/protein_id="BAC31234.1"
/transl_table=1
/translation="MLDPSSDDVFIGGTTGKLRRRSTTSRAKLAFKRGARLTSTGLTF
MDRAGSLYWPMSPFLSLHHPRASSTLSYNGTTSAYPSHPMPYSSVLTQNSLGNNHSFS
TANGLSVDRLVNGEIPYATHHLTAAALAASVPCGLSVPCSGTYSLNPCSVNLLAGQTS
YFFPHVPHPSMTSQTSTSMSARAASSSTSPQAPSTLPSILQLLPDRRKSPEENLHSPS
KKQGSARCYRKAAEDLRTVNTLTRRSPHPVRALFPQFLWLRQAMVSTGLSGSGAGRVQ
SHLREGDFLVSQRRKKKSREMSTVLGLTLSLLGIAQVPGFGNLRKIIDF"
regulatory 3889..3894
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 3908
/note="putative"
BASE COUNT 977 a 919 c 902 g 1110 t
ORIGIN
1 ggcttcgtga aggtaccgcg ccactacgac gacccgggca agggcaacta ctggatgctc
61 gacccgtcga gcgacgacgt gttcatcggc ggcacgaccg gcaagctgcg gcgccgctcc
121 accacgtctc gggccaagct ggcctttaag cgcggggcgc gcctcacctc caccggcctc
181 accttcatgg accgcgccgg ctccctctac tggcccatgt cgcccttcct gtccctgcac
241 cacccccgcg ccagcagcac tttgagttac aacgggacca cgtcggccta ccccagccac
301 cccatgccct acagctccgt gttgactcaa aactcgctgg gcaacaacca ctccttctcc
361 accgccaacg ggctgagtgt ggaccggctg gtcaacgggg agatcccgta cgccacgcac
421 cacctcacgg ccgctgcgct cgccgcctcg gtgccctgcg gcctgtcggt gccctgctcc
481 gggacctact ccctcaaccc ctgctccgtc aacctgctcg cgggccagac cagttacttt
541 ttcccccacg tcccgcaccc gtcaatgact tcgcagacca gcacgtccat gagcgcccgg
601 gccgcgtcct cctctacgtc gccgcaggcc ccctcgaccc tgccctccat actccagctt
661 ctcccagaca gacggaaatc tccagaggaa aatctgcaca gcccttctaa gaagcagggt
721 tctgctcgat gttatcggaa ggctgctgag gacttgagaa ctgtgaacac tctcaccagg
781 agatcgcctc acccagtgcg ggccctcttt cctcagttcc tttggctgcg acaagctatg
841 gtctctacag gactaagcgg atctggtgca ggtcgagttc agagccactt gagagaagga
901 gacttcttgg tctcacagag gagaaaaaaa aaatcgaggg aaatgagcac cgttctgggc
961 ttgactttgt ccctgttggg aatagctcag gttcccggct ttggaaatct caggaaaata
1021 attgattttt aatgcacact taggagccag cgttgtatgc tccagagtct ggctgtccca
1081 cggtggctgc gagcgcgcca gactctggct gactcctccc gaagctccgg agagaggccg
1141 ggctgcggtg tcgggatggc ctgccctggg actatggact cggactggct ttgtcgaggg
1201 cgctgggctg gactccaagt agagcggcag gactcggtcc ggagttgagg tctcgggtta
1261 gggactaaca acagaacatg ctattagaac atggaccagg cagtagagct agctggggct
1321 ggctcggctg caaggcctgt tctgggcccg cgttcagata gcacttgcgg gcctccctgc
1381 ccaatgagcc gcgctgctgg cgagcagcaa cgcgagggcg ctctagccca ggacaccgcc
1441 gccgcttggg gaactggttt cccagagctg cggacgcagg ctcccctacc ttacccttcc
1501 ttcttagccg tctaagatcc tttccctact tctaagaagc tgttagttag tctttgttta
1561 tggggtgcag tttcagatct cagcactcac ccggtagttg gtaaaactga tttttcaata
1621 gtctatctcc ttctggttta ttgccctcgc ctctgttatt cgggtaggaa atttcctgaa
1681 cgctaggagc agcatggagt tagggagaca aaagcgggct gggaagcaga ttaccgcgga
1741 agcgcggaga atcgctagga atcatcttcc ttttggaaga attgaaggga agagatgaga
1801 aatgcagcgg gatgcttcca cctgcacctc cctcttataa cagtcaagca tagttgttaa
1861 gcttccacat cgctgctgca tcctggccct ttagcaaaac ttaaaatagg cggaaatccc
1921 gagaccgtga tctgagaaga tacttaagat aataacaaat aactcagaat tctgcatgta
1981 agtctgtaag gagagatgga atggcctaca tcttttccgg gtttgtggcc tagagcattt
2041 cagagtcttt gacattgcgg aaaagccctc acaggaggaa agagcatata gctcttggcg
2101 aaatttgcaa acttcgggtg gctactaaag agcatgttca ataactacac gtttggatat
2161 tcattttccg gctaaagttg aattctccta tatttataga atcccgggtt gaaatagaca
2221 ccttcgtttt cgttcctcct cctcatttcc tgttattgct tccctctttg tgtgctttaa
2281 ggagcaaagg tatcttcctg cttaggcaga tactgtttgt ttgtttgttt taatttgatt
2341 gaataggaag actgaaaact gtaatggggt tagagcgaat tgtctctcgg ttggttcttt
2401 cattttctca tgactctgaa atttaatgac ctaatcattg ttgtttgaag ttaaattatc
2461 tgttaaatta gccctaaaca ataactgatg atatttttcc tttgggtctg gttgcccctg
2521 aattcttggc tctagacggg tatggcagga gtcaagaaaa atccttgatt gtgcagtatt
2581 ataaaaataa tcaattcacg gctgatgtgc aatgatgtta tttctaagtt gagcattata
2641 agttggaaat tctttttcaa acttgtgaat aaggctcata gatgaaaaaa tatgaacaga
2701 attcccatta gtattcagaa gccaaataca cacctctgcc tgctaagaat ttctcacaaa
2761 cgaataatta gctatatgga aactttcaac attgttttag aggtacattc tagaaatcta
2821 aagtatagct attttgttga gtctgatata tgttcgtttt gcacttatgg tacaaaatag
2881 ccttgaagta gtgcagattt tcctcttttt ttctttcata aagcttatgt agtctcagga
2941 gagagcgtgt tcatgcctat tgggggatca acacctttct ccgtcgctat attacaggta
3001 gccaaagaat ctttgaacct aatagaattc cagtatctga ggaaactttg ataataggaa
3061 gaactattgt gtttgctcta ttaaaatgtg ctgaatgaat aattagagac tgggatgagt
3121 gttgaaaaat tcagagcaag aataaggtgg taattttatt atttaatact tcaataattt
3181 ctataattaa taatgtgatt ttaaaagctg gcaatgtttt cttaggagaa aaaaaagagt
3241 acttggccaa ccttatcaaa aatattctgg gaaaaattaa gtaaaatcga atagaattgt
3301 cagtaggtat tgctcgtttt ttgttttgtt ttgtttttta tttatctatt tctattctgg
3361 gaaaaaatgt taattaaaca tggcaaactc cgattgcagg ttggaagact aaaatcgatc
3421 atttctgcat caatagtgtt atgtattact acattgattt gtgttcattt atgcagaggt
3481 ttcagctatt ttcttcccat atttcagtgt ctccctcttt attattgtcc cacattgctt
3541 ttaatgcagg agcttactgt aggaagcgaa aacccatcca ttctaagtac acctcatagt
3601 ggagtctgag agtgtgacca gtttacgaaa ttgtttattc atcctagctt ttttagtaat
3661 taggaacccg cttctgctta aagcctcatg ctgcttgaga gcctccattc ttttcttcac
3721 acatagtatt gatgtgtttc aataacatag gaaacatgat ttggtgagct taggtttaaa
3781 tagagtgaaa ctcacaaata agacattgtt ttccattggt ttgtctgggt tagcttcaca
3841 aaaataagat agccatgtgt tttcagctgt ttttttttta atgaaaaaaa taaaggatgg
3901 atcgtttg
//