LOCUS AK041080 2538 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530081B01 product:unclassifiable, full insert sequence. ACCESSION AK041080 VERSION AK041080.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 2538) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A530081B01 FEATURES Location/Qualifiers source 1..2538 /clone="A530081B01" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A530081B01" /db_xref="MGI:2406063" /db_xref="taxon:10090" /dev_stage="adult" /mol_type="mRNA" /organism="Mus musculus" /sex="male" /strain="C57BL/6J" /tissue_type="aorta and vein" misc_feature 1..2538 /note="putative" /note="unclassifiable" BASE COUNT 607 a 490 c 594 g 847 t ORIGIN 1 atgcaccagc ttctagagga aggataattt gtgatggaat ctatgcatct ggaattagga 61 tatttgtgat ttttttggta gctatctggt catgcctttg ttgggtggat gttcacatct 121 aatcctgttc tgttcattct ggatttgtag aattatttga aatattgttt ttcatcagct 181 gatattagtc tttttgtttt tttttatggt ttatcgcttc aaatatatat ttgtcatttc 241 atgagattga ggagttcaac tttatgagga tctcctatta aaagccatta aacttaatgt 301 gggatcaaac tgaagaggtt gagctacttt ctctaaaagg ctaaacttgg tttccagctt 361 ttgatctcaa aagtatatgt atccagtagt gggattgaca gttcagccaa ccttacacag 421 ccacttgcca gtgcaacata gtggtgttta cataggagcc ttcagaacaa ctgtcagagg 481 gcacttgtca gccttaatcc atgtgaggca ataattgaca gaaaggaaag cgatttctca 541 tctctatttt caacccttgc cttttgagtg taagagcttg ggtgctttct ttagaggcag 601 agctttctca cccacgtgta acttgagtgt tgggtagagg aaggctgacg cctattttta 661 aacaagagag agaagaggag tagagtgact ttgggtctta ccccttgaag attcttctga 721 ttgcttggaa tgatgagcat gttacattta aggtgtctgg agtcagaggt ccagtcgcat 781 ggcctctgtg tgagtcatca cttgctggtc ctttgaaatc atcatgtttg gaaatcagtg 841 agagaattga tgacaggaag gaaccagtgg gagaaccgag tacaggaact gaagcaggcc 901 aggaatgagt ttataaaaca gagcaaaagt gcgcggcctc tccactggga tgaagggaag 961 actggacagc tttttgctag cgtttatgcc cagcactgtt gtttcctttg tatgtgctgg 1021 ttttggccag gagctgtacg cagtgtgagg gagggagaga acagagtacc ctctgtctgt 1081 ggtgctcagc gtgctgcttt ttctccctgg gttatgatca tactgtcatt tggctaatga 1141 aagcaatact tactggtttt tgatttgggt catagtctaa ttaattagca agagaaaccg 1201 gcactttatg gcactggtct ccactttgta atttggagca ctttcccagt taacttaaat 1261 ttatctatta gagtttttta ttattattaa tcatttcatt cacttacatt tcaaataata 1321 attccccttc ttggttactc ctcaccaacc cgtgcatccc actccctctc ctcccctccc 1381 ctttgcctct atgagggttc tcctccaccc attcacccac tcctgcatca cctctctagc 1441 atctccccac gctggggcat caaacctgcc ttccctcaca ttgatatcag ataaggccat 1501 cctctgctac ataggtatct ggagtcctgg ctcctccatg tatactcttt agttggttta 1561 gtccctggga gctctgggtg gtccagctaa ttgaaattgt tcttcttatg gggttgtaac 1621 ccccttcagc ttcttcagtc cttcctctat ctcttccatt ggggttccca ggctcagtcc 1681 gatggttgcc tgtgagtatc tgcatctgta ttggttcttg ctggtagatc ctctcaagga 1741 acagctatat caggctcctg tcagcaaatg tttcttggca tcagcaatag tgtgggggtt 1801 tggtgtctgc agacaggatg gatccctagg tggggtggtc tctggatagc ctagccttcc 1861 gtctctgttc cttttttttt gtccctgtct ttcctttgga caggaatatt tctgggttaa 1921 aatttttgag atgcatggat ggccccatcc ctctactggg ggtgtatgtg cctatcttct 1981 ggaggtggtc tctatgggtt gtatctcccc tttgttgggt atttgacgaa agtcaccatt 2041 ggctcctgga atctcttgct tccctggagt ctgaggcttt ctagaacttt cttacaaaaa 2101 aaattttttt tttctctttg taaacctgac tttttgtgtc tctgtgtata aagtccatta 2161 tatggaattt taaaatttac tttcaaacat gagaagaaaa taaataatgg gcagttagaa 2221 gaagcaggga aatgctaaaa tatgctttgt ggagaaatgg catttgtgag aagggtgcca 2281 tgtcaggtcc ttgggggaag ttggaatagc agtaacattt ttttgttttg ttttgttttt 2341 ttgtttttgg atttggaagg agggtcttgg aaaaggtttt cagtagacac ttagaaccag 2401 aaaaatggga gactgaaagc tggaaaggaa ttttaatggg acaagaacaa caaaggagaa 2461 gatggggagg ggctgggatc aagatttcaa aggtattgtc atccttgagg agtgataggg 2521 acacttttct ggggttcg //