LOCUS AK040771 1954 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male aorta and vein cDNA, RIKEN full-length
enriched library, clone:A530024A02 product:unclassifiable, full
insert sequence.
ACCESSION AK040771
VERSION AK040771.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 1954)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A530024A02
FEATURES Location/Qualifiers
source 1..1954
/clone="A530024A02"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A530024A02"
/db_xref="MGI:2405500"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="aorta and vein"
misc_feature 1..1954
/note="putative"
/note="unclassifiable"
BASE COUNT 428 a 506 c 410 g 610 t
ORIGIN
1 agctctgtgc tttgtgtcct cgtcagtgtg gctaccgtca cgtttgtact gtgagtgctc
61 tctgtggagc atacatggga catgaaactc actgcttcaa tcacttcttt tcttttcttt
121 ttttgttttg ttttgttttt tttgggggga cagggtttct ctgtgtagcc ctggctatcc
181 tggaactcac tctgtagacc aggctgacct cgaactcaga aatccgcctg tctctgcctc
241 ccaagtgctg ggattaaagg tgtgcgccac cactgcccgg cctgcttcaa tcacttctaa
301 gtgtacatac agttcaacag aaccgactgt cttacattgc tgtgaagcca tagccgccac
361 ctacctctgt agctttcctt ccccataacc atcacgccct ctactttgag atatcccagg
421 ctggcctgga acacactatc tagccaagga tgaccttggc tctcctgcct ctgtctctga
481 ttgcctccac atccagttct agcagtccca gggatgaacg caggacaccc aaggtctgct
541 actgaggtac agccccaacc tctccagagt tcttttcttc atgtaaaact aaaactctta
601 gtcaggcgtg gtgaaccata cctgtaatcc tggtactcag aaggctgaga caggaagatg
661 ggagagtctg aggtcagcct gggctacaga gacggcctga cttggtggtg tttatttaac
721 ctaagcactt gggtggcaga ggcaaacgtg ctgtctgccc gtgatggaaa cagggcatga
781 ctgtattttg aatacttgtt gtttatggca gggtaagtcc tgtacattgg ctgtctcccc
841 gcttcctttg tttatcctgg agctagcaaa tggtcccatt taaacatttg cttggtgttc
901 tgtgaaccac gcctggcttt ttctccagtt gttcctgcag ctctggcaaa tgcttgatgg
961 tttttctttc ttgacggtgt tagctaacac gtgttccatt tattcttgtc cctctctctg
1021 atgctccaga ctgtctggta ccacaagccc ttgcatcgct gactattcct tacccctaca
1081 gaggtcccca gtttttctta ggacaatgca tattgaagaa cattttgctg gaaatttctg
1141 aaaaataaaa tgctgtatat ctcttgaaca tatacctact tgctcttcat tattattcct
1201 tgaatctaac attcaagcct agcgattatt tacacagcat tctcatcata tcacgtatta
1261 aaagtaatta cagacgacct aaatctacaa gaggatatgg gtagattatc cagattctat
1321 ggcagttgtt aggatttttt ttgtctttga aaaggatcct ggaaacaatc cccaatgtag
1381 taggcaactt cctgtcactg ctgcaaaatg ccagacacaa gtaacgtacg gggaggagag
1441 atttctttta gtgaatggtt gcagaggttt ttgtctacga ctgtgttgct ctggcctgta
1501 gtgaggcagc ccctcatgac tggtgcaggg tagaggactt ttcacttcag ggcttcactg
1561 tcctcctcca gggcgtagcc cacagatgta acttcctccc aacaggctcc acccccgtga
1621 tggttccata cccctctctc ccatagctcc acgactacag ggacctttgg ggaacatccc
1681 atatccaaac aataacagct tcctggagaa ggctgtgctt agcttccacg caagccctct
1741 tctcagtctt acacttgctt ttaacttacc ctgctgcctc caaattctgg tgcctcgcgc
1801 tttctgtggg gtagatcagc tttctgctca tgtggcgctt tctctccaaa cacttcagcc
1861 tgtatcacca tctgcttgct gtctcccaga cttgcttgaa acctgtctat aattatttcc
1921 ttttatagtc tcttagtttt agagtttata ttgc
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