LOCUS AK040631 2416 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 0 day neonate thymus cDNA, RIKEN full-length enriched
library, clone:A430110L20 product:hypothetical protein, full
insert sequence.
ACCESSION AK040631
VERSION AK040631.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2416)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A430110L20
FEATURES Location/Qualifiers
source 1..2416
/clone="A430110L20"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A430110L20"
/db_xref="MGI:2405318"
/db_xref="taxon:10090"
/dev_stage="0 day neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
CDS 1314..1841
/codon_start=1
/note="hypothetical protein (evidence:
decoder,Longest-ORF)"
/note="putative"
/protein_id="BAC30653.1"
/transl_table=1
/translation="MVLCTYKPQSNIQRLRSWPLFYGPLSLTPATPDLLLSECFHSLC
ICCDFPHMTIPKSPWRLSSESSWEEAVFLPYQALPLRKALLQSRSTTGTWQAFAKWIL
LSTQLSVQLQPMSKALAVCLRCCSRPWNYVVNKTDSYGVPMKLIFLYAHITVNAHFRF
CLLRKTQNKKERNRK"
regulatory 2403..2408
/note="putative"
/regulatory_class="polyA_signal_sequence"
polyA_site 2416
/note="putative"
BASE COUNT 615 a 573 c 564 g 664 t
ORIGIN
1 ttttgaaaag gaattatgtg tatgtatctg tgtgagagta tgccacatat tttgtggtgc
61 ctagaatagg gtgctggacc tcctggggct gaagttacag gcagttgtga gctatgtgac
121 atgagtactg ggaactgaac tcagatcttc tgcaaaggca gcaagagccc tcaaccactg
181 agtctctcca tctcccaata gtcctcattt aaaacagttc ttattttatc tgcgtctgtg
241 tgagggtgtt gcatcctcta aagctggagt tacagacagt tgtgagctgc catgtgggtg
301 ctgggaattg taccctggtt ctttcagagg acacatagtg ctcttaacca ctgagccatc
361 tccccagacc cccttcttca tttttttttt aaatgagggc agaaactgca ccttaagact
421 aatgaccaaa tcacataact cataagtggc aacaccagtg ttcaaacccg aggtggcagg
481 tcccagaacc tgtgctgccc aaattggatg accttgcatg gtagatggta gctgcagatg
541 gagaccagag gacaagggag ggattcaagg attcctgcgg tgtctgcaca gccagcatgc
601 tctgcttgct ctgaacttag ttagcgggtg tgaggtgtct cgtggggact gttgggaatg
661 ccttgcacct tgcattgcgc tgaggctgta cacaggtcta agagcgactt tatacactaa
721 ggtcaagaga aggtgaggta atcctagctt aatcgttagg tcaaattgac aggagaagta
781 taacatccat tgatttatca gttttatcac cttaagattt ccttgaacta actggaagct
841 gacttctggt cttttgtctc tctgaggtta caagcgtgtc tatatttaga tcaatagtca
901 cgcttctgtg gtgatggacc agtgtgtgcc tccagaaacg gctgtgagct gaaaccgcat
961 gtgtgtcctt agcagagaag tcaacggctc tgtaggtctg cataccctcg ccagagggac
1021 tctgcacaga ctcgcttagt aagcagataa acaaactttg tgctcgcaca tagccggctg
1081 ctaggccagc ctccactcgt tcacgggagc caggggcctc ctgtttagct ccagacccag
1141 atcttttctc ctgtcaccat tgccattaat attttgcttt tttttccccc tcccaatctg
1201 gattagatga cagcctccta aatgctttgt gctgtttcct aactagttgc ctttactgct
1261 accaagatca ttatagtaag gaataaaaac agtatcactt ggaagtgttt tggatggttc
1321 tctgtacata taagccacaa tccaatatcc agagacttag aagttggcct cttttttatg
1381 gccctctatc cctcacacca gctaccccag atctcctgct ttcagagtgc tttcatagtc
1441 tgtgcatctg ttgtgatttt cctcacatga ccattcctaa atccccatgg aggttgtcct
1501 cagaatcatc ttgggaagaa gcggttttct taccctacca agctctgcct ttgaggaagg
1561 ccttactgca gtctcggtcc accacaggta cctggcaggc atttgccaaa tggattcttc
1621 tctccaccca actctccgtc caactccaac caatgtctaa agcacttgcc gtatgtctaa
1681 ggtgctgttc taggccctgg aactatgtgg tgaacaagac agactcctat ggagttccta
1741 tgaaacttat atttttatac gctcacatca ctgtaaatgc tcattttaga ttctgtcttc
1801 taaggaagac ccaaaataaa aaagaaagaa acaggaaata aatcacatgg cgcgcagtgc
1861 taagccgaga ctttaagttg ggtcccatga cgcagatgct ttctttgtgt tgggtggtta
1921 ggtagggcct ctctgagggg catcctgaag gctgagatct gcatcagctg ctctcaagat
1981 cgggcagaga gcatgccagg caggggagac tacacagagg ctttagagaa agcacaaccc
2041 agcttttaga acaagcacgc tagttagctg aaagacacgc aggaacagag cagagtgaga
2101 aaacgcctct agggcgctga gaagcgaaca cgtggactgc agttggtttg aggaccaaag
2161 gtaatcattc cttaaaacgc tgcattcttg ctggcagctg ctaatagcaa cataaaaagg
2221 ccctgttgtt cctaactgat gcacaaacgc tctcaggaat gaggttccgc atgcccgctt
2281 cttcctgtca cttgcagcca agtcatcgtg tcggaaaggc cggtgtgaag aaggtacctg
2341 attttgattc acacgagttc ccatcatccc ttgggccttt attttgccta agatccatga
2401 ttaataaagc cacgag
//