LOCUS AK039369 2480 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus adult male spinal cord cDNA, RIKEN full-length
enriched library, clone:A330033F05
product:1D-myo-inositol-trisphosphate 3-kinase (EC 2.7.1.127) B
homolog [Rattus norvegicus], full insert sequence.
ACCESSION AK039369
VERSION AK039369.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 2480)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A330033F05
FEATURES Location/Qualifiers
source 1..2480
/clone="A330033F05"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A330033F05"
/db_xref="MGI:2403836"
/db_xref="taxon:10090"
/dev_stage="adult"
/mol_type="mRNA"
/organism="Mus musculus"
/sex="male"
/strain="C57BL/6J"
/tissue_type="spinal cord"
misc_feature 1..2480
/note="1D-myo-inositol-trisphosphate 3-kinase (EC
2.7.1.127) B homolog [Rattus norvegicus] (PIR|S41053,
evidence: FASTY, 97.1%ID, 60.6%length, match=1239)"
/note="putative"
BASE COUNT 605 a 707 c 639 g 529 t
ORIGIN
1 ggccagacgg agatgctcac cctagctgcc aagagatgcc cccagaccag aaggacaagg
61 cctccttaaa agaggcctgc agccccagca acatcccagc catccctgca gtcatcatta
121 cagatatggg tgctcaggag gatggagggc tagaggagat ccaaggaagc cctcggggtc
181 ccctgcctct gaggaagctg tcctcctcct cagcctcctc cactggcttc tcctcttctt
241 acgatgactc ggaggaggac atctccagtg accctgagcg cacgctggac cccaactcag
301 cctttttgca taccctggac cagcagaagc ccagagtgag caagtcatgg agaaagataa
361 agaacatggt gcagtggtcc ccctttgtca tgtccttcaa gaagaagtac ccctggatcc
421 agctggcagg acatgcaggg agcttcaagg cagctgcaaa tggccgcatc cttaagaagc
481 actgtgagtc tgagcagcgc tgcctggacc ggttaatggc ggatgtgctg agacccttcg
541 tgccagccta ccatggggac gtggtgaagg atggggaacg ctacaaccag atggacgacc
601 tgctggctga cttcgattcg ccctgcgtga tggactgcaa gatgggtgtc aggacatacc
661 tggaggaaga actcaccaag gcccggaaga agcctagctt gcggaaggac atgtaccaga
721 agatggtcga ggtggaccct gaggccccca ctgaagagga gaaagcccag cgagctgtga
781 ccaagccacg ttacatgcag tggcgggaaa ccatcagttc gacagccacc ctaggcttca
841 ggatcgaagg catcaagaag gaagatggct ctgtgaaccg tgacttcaag aagaccaaaa
901 caagggagca ggtcaccgag gctttcagag aattcactaa gggaaaccag aacatcttga
961 tcgcctaccg ggaccggctg aaggccattc gagcgaccct ggaaatctct cccttcttca
1021 agtgccacga ggtcattggc agctctctcc tcttcatcca tgacaagaag gagcaagcca
1081 aggtgtggat gattgacttt gggaaaacca cgccccttcc ggaaggccag accctacaac
1141 acgacgtccc ctggcaggag gggaaccggg aggatggcta cctctcaggg ctggacaacc
1201 tcatcgacat cctgacggaa atgtcccagg gcagcccact cacctgaggc caccgccacc
1261 gtgcatagcc gtgccacttt gcccgccacc tctgcctgtc gcctctctcc tcccctaatt
1321 cttccttttc ctgtctgagc gcctacctag aacagagcct cccatctgca ctacaggaca
1381 ctttggagaa aaaaaagaga tttttttttt ctagatcttt acttccccgg cctcctacat
1441 aggggcttgg aggtggcgtt tctcatgctc tctaaataga accaccttct cgaagagaat
1501 tacacaaagc taggccccac atcctgttac actcagagtc ggcacgggtc cagaaggccg
1561 tgtgatccct ggttgcctaa agtcttgaga gattaagcct ccctctggga gacactgccc
1621 ccctcccaga aaattctggc ccacactggc taccagtagg gaccttgctg ccccctagtg
1681 gctaatgcca tcagtaagca cagtcccatt tgtgcctctc accacgggcc ctgaagccag
1741 gacagggacc tgatttctgg gagttggaaa tacaatctct ggggttctgc atctggatta
1801 tgagcaaagt ctcctccagt gggaagtccc agctcccagg gacactgagt ggcttctcta
1861 gagatgctaa atcagggccc caccttgcca gcctaggagg agtatggaga gcagctccat
1921 ttttaaagaa cgtcaccctt ccatctggga gcattgcccg tgaattcaga gaggacattc
1981 tgcaagcgga gtttcagggg atgacgtcac ctcctagagc tactgattac tgcccttaat
2041 ctgcttgctg tgggaaggtc cagagctggg cacaatactc aaggctcaca ccaacctcca
2101 gggagcaatc actaggcagc agttctgaga gccagccaca cccgggagag caatcactag
2161 gccttaggga accaggattc tggcttcctg gaatgatccc tgagtttccc ttgaaatcac
2221 tcactctccc agcttgaagg acttagaccg gtgtttctcc atgtaattcg gtagttgcca
2281 gagttgttca gagggctgcc caagccttcc tcttgctcga gttctgagct tcttgaaggg
2341 ctatgggaag atagatcatt gttattcgcc acttcagctc tgaagcaagt agcctctctg
2401 attgaaaaga gtgtacaact tgtatgactt tttaaaagac aaaactccta gctctgttgc
2461 tgtttggagc tatcctcttc
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