LOCUS       AK038311                3693 bp    mRNA    linear   HTC 06-OCT-2010
DEFINITION  Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
            enriched library, clone:A130094P19 product:unclassifiable, full
            insert sequence.
ACCESSION   AK038311
VERSION     AK038311.1
KEYWORDS    HTC_FLI; HTC; CAP trapper.
SOURCE      Mus musculus (house mouse)
  ORGANISM  Mus musculus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE   1  (bases 1 to 3693)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
            Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
            Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
            Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
            Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
            Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
            Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
            Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
            Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
            Contact:Yoshihide Hayashizaki
            The Institute of Physical and Chemical Research (RIKEN), Omics
            Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
            Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
            URL    :http://www.osc.riken.jp/
REFERENCE   2
  AUTHORS   
  CONSRTM   The FANTOM Consortium, Riken Genome Exploration Research Group and
            Genome Science Group (Genome Network Project Core Group)
  TITLE     The Transcriptional Landscape of the Mammalian Genome
  JOURNAL   Science 309, 1559-1563 (2005)
REFERENCE   3
  AUTHORS   
  CONSRTM   RIKEN Genome Exploration Research Group and Genome Science Group
            (Genome Network Project Core Group) and the FANTOM Consortium
  TITLE     Antisense Transcription in the Mammalian Transcriptome
  JOURNAL   Science 309, 1564-1566 (2005)
REFERENCE   4
  AUTHORS   
  CONSRTM   The FANTOM Consortium and the RIKEN Genome Exploration Research
            Group Phase I and II Team
  TITLE     Analysis of the mouse transcriptome based on functional annotation
            of 60,770 full-length cDNAs
  JOURNAL   Nature 420, 563-573 (2002)
REFERENCE   5
  AUTHORS   
  CONSRTM   The RIKEN Genome Exploration Research Group Phase II Team and the
            FANTOM Consortium
  TITLE     Functional annotation of a full-length mouse cDNA collection
  JOURNAL   Nature 409, 685-690 (2001)
REFERENCE   6
  AUTHORS   Carninci,P. and Hayashizaki,Y.
  TITLE     High-efficiency full-length cDNA cloning
  JOURNAL   Meth. Enzymol. 303, 19-44 (1999)
REFERENCE   7
  AUTHORS   Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
            Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
  TITLE     Normalization and subtraction of cap-trapper-selected cDNAs to
            prepare full-length cDNA libraries for rapid discovery of new genes
  JOURNAL   Genome Res. 10, 1617-1630 (2000)
REFERENCE   8
  AUTHORS   Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
            Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
            Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
            Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
            Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
            Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
            Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
            Inoue,Y., Kira,A. and Hayashizaki,Y.
  TITLE     RIKEN integrated sequence analysis (RISA) system-384-format
            sequencing pipeline with 384 multicapillary sequencer
  JOURNAL   Genome Res. 10, 1757-1771 (2000)
COMMENT     cDNA library was prepared and sequenced in Mouse Genome
            Encyclopedia Project of Genome Exploration Research Group in Riken
            Genomic Sciences Center and Genome Science Laboratory in RIKEN.
            Division of Experimental Animal Research in Riken contributed to
            prepare mouse tissues.
            
            Please visit our web site for further details.
            URL:http://www.osc.riken.jp/
            URL:http://fantom.gsc.riken.jp/
            
            clone information is available at:
            http://fantom.gsc.riken.jp/3/db/annotate/
            main.cgi?masterid=A130094P19
FEATURES             Location/Qualifiers
     source          1..3693
                     /clone="A130094P19"
                     /clone_lib="RIKEN full-length enriched mouse cDNA library"
                     /db_xref="FANTOM_DB:A130094P19"
                     /db_xref="MGI:2402730"
                     /db_xref="taxon:10090"
                     /dev_stage="16 days neonate"
                     /mol_type="mRNA"
                     /organism="Mus musculus"
                     /strain="C57BL/6J"
                     /tissue_type="thymus"
     misc_feature    1..3693
                     /note="putative"
                     /note="unclassifiable"
BASE COUNT          875 a          918 c          875 g         1025 t
ORIGIN      
        1 gctttctgga cttagggtcc agtgaggaaa gcatccaaca tctatgacaa atagtgaata
       61 agaaactgta cattaactat ggagaaagag ctgtgaggga aaggaggcct ttgacatttt
      121 agactatctc ttagcccttc tcctgcctct taattaagag gtgctttctc tttgcactgg
      181 accctggaaa tgatacagtc atccccgctt ggttccttct ggccggcaac ttctgtctgg
      241 tcttcccctc ctgcttctag aaaggaaaca agaagtcatt taaagatatt gctgagatca
      301 gggacgagtc atttcttgtc tcttttctgt ccttctgaag gtcactatga ccagctccac
      361 ctcagacctt agaagttacc cggtctgagg agaggagaca aagtcgtcta tcactcgctg
      421 gcttggaagt catgaatctt cctgccagcg agctatttct ttgcagacac ttactatgtc
      481 cccagttctg ggttagtgtt ggctctgggc aggaccaatt agggatgcag gacaggaacc
      541 ataaagcaag cttccaggaa atgaggctcc aagttcacag tcagctttat ttaagggctt
      601 gtttgcaagc acagggacag ggccgtgcca ggcaagttaa acattgtccc tggccccaag
      661 gggatggatc atggcgagtg cagacatggc ctggtgcaga gagggtgaga agacagcctg
      721 accactgata aggtaagcct atagacagtt gtcacaagca tgacactgct cactgttgct
      781 ctctaacctt ggtccagaat cacgggcatt ccatagttgg caactgggct acgtctggtt
      841 catcgcaagc tgtcatggaa ggagaatgta tgtcaggagc cactgtgccc tgccccccac
      901 cccccccgcc ccactctcag gtctttccca gggcctacct catagtttcc aaacctttca
      961 agactgcggt aatgccctct ctaccggtac attttaagcc ccgctacttt gtttgttact
     1021 ataaaagtcg catcagacat tcccagaccc caagaggcca gacaaacgcc aactgtcctc
     1081 ctgtggtcct gctagacaca tctagaataa cccagtcagt caatggacag gggagacatc
     1141 tctgtgtagc ctggcaggtg ggggaagtat cccgtgtggg acatacctgc ctgtcctcag
     1201 ttatctgaaa ttccagtgta ggcggacatc ctgtactttc tcagcagctt ctgtgaaatg
     1261 ggtgaatcca gaaaggacaa agactctaga ggattctgaa ggtccccagg aagggtcaga
     1321 agggacccta ttactgtggc tgctaactgc ctgctgtcat gtctgctggt atacccaggc
     1381 ctaggcatag ctcctctgtg cactgggatg ggtgtgccgg gccttttcct cctctccacc
     1441 actaagctct ccccagggat gggacacagt gagggtccca tcccaacctt ggcccaggac
     1501 tcaagaggcc caccaggcca tcagaaggcc gttcttgttt cctcactgac tagcagcaaa
     1561 atgcaacact cttggctcaa acaatacaga aaatgtcccc tccatcttaa ttagtcctag
     1621 cacaggcagc tccagtgttg gctaattcag tgttagcaga gactgttatt ttgacctgta
     1681 gcctgtgcga ctctttcttg tacccagggc atgtcgcctt atgtccttta ttggcttcag
     1741 atggctgctg cacgtctcaa tgtctgcctg aggacatggt aacaagccat caaggaagaa
     1801 gagagggtgg cttgcccaga tgttcaagcc catgatgtca ttctcaggaa ctcccatcag
     1861 atagctcctg tgtgtgtgtt tgagctgaag ttgtcacgtg cttgcatgta cgtcagccta
     1921 aggcacagca gtggcctctg actgtcactg tttgttgctg gagtggtccc tgggtgttca
     1981 gtgcatggag tggagacaca cacacacaca cacatacaca cacacctgag ctacaccagg
     2041 ttctctaacc actccctacc ttattctata aagacttcga ggttgttgtt tttaatctgt
     2101 tttctcatta aaaactcaag cattacagag aaccatgact aaaaaaaatt ccaataattt
     2161 aactcattct aaccatactt gggtctatga caaattacct aattttattt catacaaatg
     2221 taatccgatt ttaatttagg tttttgtttt tctgtttctt tctcttttcc ttattttggg
     2281 cttttgagat gagagtttta agatgtatcc ctgcctgccc tggaactcac tatatagacc
     2341 aggctggact caaacttgtg gccaccatct gagtattggg atttcaggcc tgcaccacca
     2401 ggggcagcta acctcctact tcatcatttt aatgccactt cacacgtttc cctttgccat
     2461 tttaatttaa ttatactagc aatcacatgc ggctttggtc aggttcttag gtgacagccg
     2521 cagctctgtc tcccatggac agccttatag aagaacctcg cggtaaccca tttcacagga
     2581 gaggctacac attcctcatg cttaacaaca tccagtgagc aatggctggt ggaccacaaa
     2641 ctgatgtgtg catgggcatg tgcatgtgtg catgtgtgtg tgctcgtgag cacacaggct
     2701 tgcatgcatg tgcatgtatt gtgcatgtgt gcacatgaag gtaggcatgg catgccttag
     2761 tgtgcatgtg gaggtcagaa cggaggacag acttggggag ccagttctca ccttctacct
     2821 tgcttggcat ggggtctttg gccatttctg ttgctaagct ctgtacccca ggctggctga
     2881 cttgtgagct tctgggtgat tctcttgtcc acaactccca tcttgctgta gaagtgctgg
     2941 gattgcagat gcaggctgtt gcagctgggc tttttctgtg agttctgggg aatctcaggc
     3001 tgccgtgctt atttgtaaaa tgctttaccc gctgagccac ctccctgttt cgtgtctcag
     3061 ctcggacagc tgacatcatc cttcttttcc tatggatagc tgccaccatc catggtggca
     3121 gaggtcgcca tatatatata catatacata tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     3181 tgtgtgtgtg tgtgtaggaa catattcata aaatgtatcc gttttcttct cactttatta
     3241 catcattggg tgatattccc ctgaagataa catggtgtgt cagttacggt ttctatggct
     3301 gcaagaatac accaagacca aaaagcaagt tggagaagaa agggtttctt tggcttacac
     3361 ttccatgtca ttgtcatcac cacaggaagt caggacagga actcaagaaa cacaggaacc
     3421 tggagacagg agcagatgca gaggccatgg aggggtgctg cctactggct tactccccct
     3481 ggcttgctca gcctcctttc ttacagaacc cgagaccacc atgctttctt acagaacccg
     3541 agaccaccag tgcagggatg gcaccaccca caaggggctg tgccctctcc tgttgatcgc
     3601 taattgagaa aatgctttat agctggatat catagaggta tttcctctgg agctccttcc
     3661 actctgatag ctgtagattg tgtcaggttg acc
//