LOCUS AK038311 3693 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130094P19 product:unclassifiable, full insert sequence. ACCESSION AK038311 VERSION AK038311.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 3693) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A130094P19 FEATURES Location/Qualifiers source 1..3693 /clone="A130094P19" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A130094P19" /db_xref="MGI:2402730" /db_xref="taxon:10090" /dev_stage="16 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="thymus" misc_feature 1..3693 /note="putative" /note="unclassifiable" BASE COUNT 875 a 918 c 875 g 1025 t ORIGIN 1 gctttctgga cttagggtcc agtgaggaaa gcatccaaca tctatgacaa atagtgaata 61 agaaactgta cattaactat ggagaaagag ctgtgaggga aaggaggcct ttgacatttt 121 agactatctc ttagcccttc tcctgcctct taattaagag gtgctttctc tttgcactgg 181 accctggaaa tgatacagtc atccccgctt ggttccttct ggccggcaac ttctgtctgg 241 tcttcccctc ctgcttctag aaaggaaaca agaagtcatt taaagatatt gctgagatca 301 gggacgagtc atttcttgtc tcttttctgt ccttctgaag gtcactatga ccagctccac 361 ctcagacctt agaagttacc cggtctgagg agaggagaca aagtcgtcta tcactcgctg 421 gcttggaagt catgaatctt cctgccagcg agctatttct ttgcagacac ttactatgtc 481 cccagttctg ggttagtgtt ggctctgggc aggaccaatt agggatgcag gacaggaacc 541 ataaagcaag cttccaggaa atgaggctcc aagttcacag tcagctttat ttaagggctt 601 gtttgcaagc acagggacag ggccgtgcca ggcaagttaa acattgtccc tggccccaag 661 gggatggatc atggcgagtg cagacatggc ctggtgcaga gagggtgaga agacagcctg 721 accactgata aggtaagcct atagacagtt gtcacaagca tgacactgct cactgttgct 781 ctctaacctt ggtccagaat cacgggcatt ccatagttgg caactgggct acgtctggtt 841 catcgcaagc tgtcatggaa ggagaatgta tgtcaggagc cactgtgccc tgccccccac 901 cccccccgcc ccactctcag gtctttccca gggcctacct catagtttcc aaacctttca 961 agactgcggt aatgccctct ctaccggtac attttaagcc ccgctacttt gtttgttact 1021 ataaaagtcg catcagacat tcccagaccc caagaggcca gacaaacgcc aactgtcctc 1081 ctgtggtcct gctagacaca tctagaataa cccagtcagt caatggacag gggagacatc 1141 tctgtgtagc ctggcaggtg ggggaagtat cccgtgtggg acatacctgc ctgtcctcag 1201 ttatctgaaa ttccagtgta ggcggacatc ctgtactttc tcagcagctt ctgtgaaatg 1261 ggtgaatcca gaaaggacaa agactctaga ggattctgaa ggtccccagg aagggtcaga 1321 agggacccta ttactgtggc tgctaactgc ctgctgtcat gtctgctggt atacccaggc 1381 ctaggcatag ctcctctgtg cactgggatg ggtgtgccgg gccttttcct cctctccacc 1441 actaagctct ccccagggat gggacacagt gagggtccca tcccaacctt ggcccaggac 1501 tcaagaggcc caccaggcca tcagaaggcc gttcttgttt cctcactgac tagcagcaaa 1561 atgcaacact cttggctcaa acaatacaga aaatgtcccc tccatcttaa ttagtcctag 1621 cacaggcagc tccagtgttg gctaattcag tgttagcaga gactgttatt ttgacctgta 1681 gcctgtgcga ctctttcttg tacccagggc atgtcgcctt atgtccttta ttggcttcag 1741 atggctgctg cacgtctcaa tgtctgcctg aggacatggt aacaagccat caaggaagaa 1801 gagagggtgg cttgcccaga tgttcaagcc catgatgtca ttctcaggaa ctcccatcag 1861 atagctcctg tgtgtgtgtt tgagctgaag ttgtcacgtg cttgcatgta cgtcagccta 1921 aggcacagca gtggcctctg actgtcactg tttgttgctg gagtggtccc tgggtgttca 1981 gtgcatggag tggagacaca cacacacaca cacatacaca cacacctgag ctacaccagg 2041 ttctctaacc actccctacc ttattctata aagacttcga ggttgttgtt tttaatctgt 2101 tttctcatta aaaactcaag cattacagag aaccatgact aaaaaaaatt ccaataattt 2161 aactcattct aaccatactt gggtctatga caaattacct aattttattt catacaaatg 2221 taatccgatt ttaatttagg tttttgtttt tctgtttctt tctcttttcc ttattttggg 2281 cttttgagat gagagtttta agatgtatcc ctgcctgccc tggaactcac tatatagacc 2341 aggctggact caaacttgtg gccaccatct gagtattggg atttcaggcc tgcaccacca 2401 ggggcagcta acctcctact tcatcatttt aatgccactt cacacgtttc cctttgccat 2461 tttaatttaa ttatactagc aatcacatgc ggctttggtc aggttcttag gtgacagccg 2521 cagctctgtc tcccatggac agccttatag aagaacctcg cggtaaccca tttcacagga 2581 gaggctacac attcctcatg cttaacaaca tccagtgagc aatggctggt ggaccacaaa 2641 ctgatgtgtg catgggcatg tgcatgtgtg catgtgtgtg tgctcgtgag cacacaggct 2701 tgcatgcatg tgcatgtatt gtgcatgtgt gcacatgaag gtaggcatgg catgccttag 2761 tgtgcatgtg gaggtcagaa cggaggacag acttggggag ccagttctca ccttctacct 2821 tgcttggcat ggggtctttg gccatttctg ttgctaagct ctgtacccca ggctggctga 2881 cttgtgagct tctgggtgat tctcttgtcc acaactccca tcttgctgta gaagtgctgg 2941 gattgcagat gcaggctgtt gcagctgggc tttttctgtg agttctgggg aatctcaggc 3001 tgccgtgctt atttgtaaaa tgctttaccc gctgagccac ctccctgttt cgtgtctcag 3061 ctcggacagc tgacatcatc cttcttttcc tatggatagc tgccaccatc catggtggca 3121 gaggtcgcca tatatatata catatacata tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg 3181 tgtgtgtgtg tgtgtaggaa catattcata aaatgtatcc gttttcttct cactttatta 3241 catcattggg tgatattccc ctgaagataa catggtgtgt cagttacggt ttctatggct 3301 gcaagaatac accaagacca aaaagcaagt tggagaagaa agggtttctt tggcttacac 3361 ttccatgtca ttgtcatcac cacaggaagt caggacagga actcaagaaa cacaggaacc 3421 tggagacagg agcagatgca gaggccatgg aggggtgctg cctactggct tactccccct 3481 ggcttgctca gcctcctttc ttacagaacc cgagaccacc atgctttctt acagaacccg 3541 agaccaccag tgcagggatg gcaccaccca caaggggctg tgccctctcc tgttgatcgc 3601 taattgagaa aatgctttat agctggatat catagaggta tttcctctgg agctccttcc 3661 actctgatag ctgtagattg tgtcaggttg acc //