LOCUS AK037900 1078 bp mRNA linear HTC 06-OCT-2010 DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length enriched library, clone:A130061A14 product:H3 histone, family 3A, full insert sequence. ACCESSION AK037900 VERSION AK037900.1 KEYWORDS HTC_FLI; HTC; CAP trapper. SOURCE Mus musculus (house mouse) ORGANISM Mus musculus Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus. REFERENCE 1 (bases 1 to 1078) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H., Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M., Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T., Yasunishi,A., Muramatsu,M. and Hayashizaki,Y. TITLE Direct Submission JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases. Contact:Yoshihide Hayashizaki The Institute of Physical and Chemical Research (RIKEN), Omics Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan URL :http://www.osc.riken.jp/ REFERENCE 2 AUTHORS CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) TITLE The Transcriptional Landscape of the Mammalian Genome JOURNAL Science 309, 1559-1563 (2005) REFERENCE 3 AUTHORS CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group (Genome Network Project Core Group) and the FANTOM Consortium TITLE Antisense Transcription in the Mammalian Transcriptome JOURNAL Science 309, 1564-1566 (2005) REFERENCE 4 AUTHORS CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research Group Phase I and II Team TITLE Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs JOURNAL Nature 420, 563-573 (2002) REFERENCE 5 AUTHORS CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the FANTOM Consortium TITLE Functional annotation of a full-length mouse cDNA collection JOURNAL Nature 409, 685-690 (2001) REFERENCE 6 AUTHORS Carninci,P. and Hayashizaki,Y. TITLE High-efficiency full-length cDNA cloning JOURNAL Meth. Enzymol. 303, 19-44 (1999) REFERENCE 7 AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K., Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y. TITLE Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes JOURNAL Genome Res. 10, 1617-1630 (2000) REFERENCE 8 AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N., Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T., Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M., Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S., Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y., Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K., Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M., Inoue,Y., Kira,A. and Hayashizaki,Y. TITLE RIKEN integrated sequence analysis (RISA) system-384-format sequencing pipeline with 384 multicapillary sequencer JOURNAL Genome Res. 10, 1757-1771 (2000) COMMENT cDNA library was prepared and sequenced in Mouse Genome Encyclopedia Project of Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in RIKEN. Division of Experimental Animal Research in Riken contributed to prepare mouse tissues. Please visit our web site for further details. URL:http://www.osc.riken.jp/ URL:http://fantom.gsc.riken.jp/ clone information is available at: http://fantom.gsc.riken.jp/3/db/annotate/ main.cgi?masterid=A130061A14 FEATURES Location/Qualifiers source 1..1078 /clone="A130061A14" /clone_lib="RIKEN full-length enriched mouse cDNA library" /db_xref="FANTOM_DB:A130061A14" /db_xref="MGI:2402339" /db_xref="taxon:10090" /dev_stage="16 days neonate" /mol_type="mRNA" /organism="Mus musculus" /strain="C57BL/6J" /tissue_type="thymus" CDS 159..569 /codon_start=1 /note="H3 histone, family 3A (MGD|MGI:1097686 GB|NM_008210, evidence: BLASTN, 100%, match=858)" /note="putative" /protein_id="BAC29895.1" /transl_table=1 /translation="MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRP GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLV GLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA" regulatory 1061..1066 /note="putative" /regulatory_class="polyA_signal_sequence" polyA_site 1078 /note="putative" BASE COUNT 295 a 240 c 237 g 306 t ORIGIN 1 ccggcggcgt gtgtagggga aagcctcggt gtcagccatc tttcaattgt gttcgcagcc 61 ttcgccgcgc cgctgccgct ctccaacgcc agcgccgcct ctcgcttgcc gagctccagc 121 cgaaggagaa ggggggtaag taaggaggtg tccttaccat ggctcgtaca aagcagactg 181 cccgcaaatc caccggtggt aaagcaccca ggaaacaact ggctacaaaa gccgctcgca 241 agagtgcgcc ctctactgga ggggtgaaga aacctcatcg ttacaggcct ggtactgtgg 301 ccctccgtga aatcagacgc tatcagaagt ccactgaact tctgatccgc aagctcccct 361 ttcagcgtct ggtgcgagaa attgctcagg acttcaaaac agatctgcgc ttccagagtg 421 cagctattgg tgctttgcag gaggcaagtg aggcctatct ggttggcctt tttgaagata 481 ccaatctgtg tgctatccat gccaaacgtg taacaattat gccaaaagat atccagctag 541 cacgccgcat acgcggagaa cgtgcttaag agtccactat gaggggaaac atttcattct 601 caaaaaaatt ttttttcctc ttcttcctgt tatcagtagt tctgaatgtt agatattttt 661 tccatggggt caaaggtacc taagtatatg attgcgagtg gaaacatagg ggacagaatc 721 aggtattggc gtttctccac gttcatttgt gtgtgaattt ttaatataaa tgcaagatgg 781 aaagcattaa tgcaagcaaa atgtttcagt gaacacattt caacagttca actttataac 841 aattataaat aaacctgtta aaattttctg gacaatgcca gcatttggat ttttttaaaa 901 taagtaaatt tcttattgac ggcaactaaa tggtgtttgt agcattttta tcacacagta 961 gattccatcc attcactata ctaatataac tgagttgtcc tacatacaag tacatgtttt 1021 taatgttgtc agtcttctgt gctgttcctg taagtttgct attaaaatac attaaact //