LOCUS AK037326 3071 bp mRNA linear HTC 06-OCT-2010
DEFINITION Mus musculus 16 days neonate thymus cDNA, RIKEN full-length
enriched library, clone:A130006O09 product:unclassifiable, full
insert sequence.
ACCESSION AK037326
VERSION AK037326.1
KEYWORDS HTC_FLI; HTC; CAP trapper.
SOURCE Mus musculus (house mouse)
ORGANISM Mus musculus
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
Muroidea; Muridae; Murinae; Mus; Mus.
REFERENCE 1 (bases 1 to 3071)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Bono,H.,
Carninci,P., Fukuda,S., Furuno,M., Hanagaki,T., Hara,A.,
Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hirozane,T., Hori,F., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I.,
Kasukawa,T., Katoh,H., Kawai,J., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A.,
Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numazaki,R., Ohno,M.,
Ohsato,N., Okazaki,Y., Saito,R., Saitoh,H., Sakai,C., Sakai,K.,
Sakazume,N., Sano,H., Sasaki,D., Shibata,K., Shinagawa,A.,
Shiraki,T., Sogabe,Y., Tagami,M., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Takeda,Y., Tanaka,T., Tomaru,A., Toya,T.,
Yasunishi,A., Muramatsu,M. and Hayashizaki,Y.
TITLE Direct Submission
JOURNAL Submitted (16-JUL-2001) to the DDBJ/EMBL/GenBank databases.
Contact:Yoshihide Hayashizaki
The Institute of Physical and Chemical Research (RIKEN), Omics
Science Center, RIKEN Yokohama Institute; 1-7-22 Suehiro-cho,
Tsurumi-ku, Yokohama, Kanagawa 230-0045, Japan
URL :http://www.osc.riken.jp/
REFERENCE 2
AUTHORS
CONSRTM The FANTOM Consortium, Riken Genome Exploration Research Group and
Genome Science Group (Genome Network Project Core Group)
TITLE The Transcriptional Landscape of the Mammalian Genome
JOURNAL Science 309, 1559-1563 (2005)
REFERENCE 3
AUTHORS
CONSRTM RIKEN Genome Exploration Research Group and Genome Science Group
(Genome Network Project Core Group) and the FANTOM Consortium
TITLE Antisense Transcription in the Mammalian Transcriptome
JOURNAL Science 309, 1564-1566 (2005)
REFERENCE 4
AUTHORS
CONSRTM The FANTOM Consortium and the RIKEN Genome Exploration Research
Group Phase I and II Team
TITLE Analysis of the mouse transcriptome based on functional annotation
of 60,770 full-length cDNAs
JOURNAL Nature 420, 563-573 (2002)
REFERENCE 5
AUTHORS
CONSRTM The RIKEN Genome Exploration Research Group Phase II Team and the
FANTOM Consortium
TITLE Functional annotation of a full-length mouse cDNA collection
JOURNAL Nature 409, 685-690 (2001)
REFERENCE 6
AUTHORS Carninci,P. and Hayashizaki,Y.
TITLE High-efficiency full-length cDNA cloning
JOURNAL Meth. Enzymol. 303, 19-44 (1999)
REFERENCE 7
AUTHORS Carninci,P., Shibata,Y., Hayatsu,N., Sugahara,Y., Shibata,K.,
Itoh,M., Konno,H., Okazaki,Y., Muramatsu,M. and Hayashizaki,Y.
TITLE Normalization and subtraction of cap-trapper-selected cDNAs to
prepare full-length cDNA libraries for rapid discovery of new genes
JOURNAL Genome Res. 10, 1617-1630 (2000)
REFERENCE 8
AUTHORS Shibata,K., Itoh,M., Aizawa,K., Nagaoka,S., Sasaki,N.,
Carninci,P., Konno,H., Akiyama,J., Nishi,K., Kitsunai,T.,
Tashiro,H., Itoh,M., Sumi,N., Ishii,Y., Nakamura,S., Hazama,M.,
Nishine,T., Harada,A., Yamamoto,R., Matsumoto,H., Sakaguchi,S.,
Ikegami,T., Kashiwagi,K., Fujiwake,S., Inoue,K., Togawa,Y.,
Izawa,M., Ohara,E., Watahiki,M., Yoneda,Y., Ishikawa,T., Ozawa,K.,
Tanaka,T., Matsuura,S., Kawai,J., Okazaki,Y., Muramatsu,M.,
Inoue,Y., Kira,A. and Hayashizaki,Y.
TITLE RIKEN integrated sequence analysis (RISA) system-384-format
sequencing pipeline with 384 multicapillary sequencer
JOURNAL Genome Res. 10, 1757-1771 (2000)
COMMENT cDNA library was prepared and sequenced in Mouse Genome
Encyclopedia Project of Genome Exploration Research Group in Riken
Genomic Sciences Center and Genome Science Laboratory in RIKEN.
Division of Experimental Animal Research in Riken contributed to
prepare mouse tissues.
Please visit our web site for further details.
URL:http://www.osc.riken.jp/
URL:http://fantom.gsc.riken.jp/
clone information is available at:
http://fantom.gsc.riken.jp/3/db/annotate/
main.cgi?masterid=A130006O09
FEATURES Location/Qualifiers
source 1..3071
/clone="A130006O09"
/clone_lib="RIKEN full-length enriched mouse cDNA library"
/db_xref="FANTOM_DB:A130006O09"
/db_xref="MGI:2401799"
/db_xref="taxon:10090"
/dev_stage="16 days neonate"
/mol_type="mRNA"
/organism="Mus musculus"
/strain="C57BL/6J"
/tissue_type="thymus"
misc_feature 1..3071
/note="putative"
/note="unclassifiable"
BASE COUNT 812 a 702 c 716 g 841 t
ORIGIN
1 agaaagcctc tgagctagcc attccttcag atatctttta cttactgttt gacacagagt
61 tgtgataatt ttcccaggct agcctcgaac tctactccat agccttgact ttataatctt
121 tcttcctaaa cctctgaagt agttaggttt acaggcttga gccattaggt tttgctccaa
181 atcctgccct tttaggaggg ctggatcata tttccttgta tgtctatgcc gcattctgtt
241 acccaatcat ctgtcatcgg actcttggtc tgcttcatat ttgaactatt gtcagaagca
301 agtctggatg tgcttaaaat ggagacctga tgcccctgac tcccgtgagg tagacaagtt
361 gaatagactg tgtgagtgag cttggtgtgc gaacgtgcct gagcatctgt ctttctcagt
421 tgatgtaaat agttggagtg tgaaagccct gttttatatc tgaagaaatt ctccttaccc
481 attgtgctgt cagagacttg atgtaaaggt aaacaggagg cgcatgcttg acgtaggaca
541 ggccatgttc agctctgggt caggtttccc actggggcct cctccgagtc aatcctcctc
601 ctggatcatc agcttgcttc aggatgctgc ccgggtgtgc tgagcaccaa cacgcgaatt
661 tcacatcccc agcccagtgg catcgccacc gtctcttgct tatgtgattc tggccaagac
721 attttaacgt cctccatttt aagaaggttt gaggggtgta taataagtgt aacataccaa
781 aatgtattgc ccagtacctg gcttatggta tatgttctct tttccttcct tgccaggaaa
841 ggccttgttc aattactaca ggggcctcca cccggcctac cacagtgcct ggcacacaga
901 ggcagctgcc ggctgaatgc ttattaactt tatcctgcac aacactaagc agggcaaaga
961 ctgttctgtg gcagctcctt ccaaagaggt tttaagcaaa cacaacaccc ctggaatatg
1021 cgcagggctt gggaggggag gtactttgaa gagaggcttg tttggatggg taaattctgg
1081 cttttttttt tttttaagaa aaccctaacg ttggcctcat tacttttgag gcagtcattc
1141 actgcctctt tgtctgtgtg tagagtgctc ttaagaaatt actggctaga cctttaaaaa
1201 taggccagtt gtcagatgtc ttggcaagag gatgtatccc agtggtgtta ggatttttcc
1261 tgaagttaaa catctctcct tggagagggt tgtttttatc atcagctgct aaaaattctc
1321 aggaggtcac agaacaaact cagttccaag ggaaggtcat ggaatctact agatttaagt
1381 aaagggttag tgggggacag ggcttgagtt ttgttggagg gccactgaat ggctgtgggt
1441 gagaaaaaga gatgttgaag acattctcat ggttctgcgc catcacagag tccccatcct
1501 cctggatttg gtttgagcaa ggaaagtcat actggcctct gtaggtagct tgtggctctg
1561 acaggtgaac aggattgttg atgggagtca aaggacacgc agtttgatca tgaagatcgt
1621 tccatctgtg tcagagcccc gccttggatt agcaagcagc agtagcacat ctgagggtct
1681 cagcagccct gtggccatag ctgcccttag gatgctgtta ggatgaacac cattagcatc
1741 aagtaggacc agccagttca tgcatggttg acataatgat ggagagtttc ccttttctcc
1801 acctggccca cattaccaga taacgctaag agcagcacaa ttcaggtgac acttctaaac
1861 aagagagtgt tccacactgg gcctcggaga cactctggag agcagttccc gggaatgctg
1921 tctatttcag ctttggattt ctagaactag ctcggcaact gtcacatgta gggggctgtg
1981 gtggaaaggg cctgtgccag catcccagaa ctctcaaggg ctgtagggat cttctgtcac
2041 aatattatca ctggccaggt ttgttacttt ggaggaactt aacatcagaa gtgtgaccca
2101 ttaggaacct tgagcccttt cttttcacct ttatttgaac ttgtacccaa gactagctat
2161 tggcttccag tgtttgtatg aaaacagaac aaaaagaaaa gaaaccctgg ggtctttggg
2221 ggctttctcc aggttcattc atttgttttg ttaaaaacaa ggatcataag ctgggagatg
2281 gctcggttgg taagagtgtt tgccacaaaa gcatgaggac ctgggctgga tcctcagccc
2341 ccaacgtaaa aagccacatg tggcaggcac gtgcccctgc tgactgacca gcctggctca
2401 aggagacttg ggctgggaga tagcttagag tttaagaaca caggacccag gttcagctcc
2461 cagcatttgc atcctgtgac ttacagctaa ctatagctcc agctccagga ggaccggata
2521 cctctggcct ccatggcacc ttcactccat gtatgcatct agacacacac atacacaatt
2581 taaaaacaat aaaaataaat cttgaggaaa gtaacaaggt ggaaagtgat tggggaagag
2641 acctgacact gacctctgac ctccatgact gagtactgac ctctgacctt catgactact
2701 gacctctgac ctccataagt acctgcacac atgcatctca cccacttaca caagtgcaca
2761 cacataatat cacacagtgt ccaattaaag cagatttaat gtgctagttg aaaataaata
2821 cagagtgcag cttcacaagt cagtcagtaa aggagacacc cctgagcctg acaacctgag
2881 ttggatcccc tgagtccatg caggagaagg aaagaaagaa caaattgccc tctgcggacg
2941 cccacacagg tacatacaca tataaaataa atgttaagaa gttattaaga actctttaaa
3001 aaatctactc tccatggatg cctcttatat gttacttatg ccttataaga tgtgaatggc
3061 taatacatac c
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